Ss1.1-rpigcb_13670.5.69
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GAACTTTTCTCTCCTGTGGACTTGAACCAGGTCATTATCAGTGAGAACAGATCCCTCCCC AGCCAGCAGCACCGGCTTTTCAAACACCTGTTTTCCCTTCAGCAGGCACATCTATGGTGC CTTTCTCGCTGTGTCCAGGAGCCCTCTTTCTGTCAGCTGGCAGAGATAACAGACAGCTCA CCCTTGTACTTGACCTGTACCCTCTACCCAGAGGCCCAGGTGTGTGACGACGTCATGGAG GCCAGTCCCAGGGGCTGCAGACGGATCCTGCCCCGCAGGCCGAATGCCCTCTTCCAGAGG AGAGTTGTGCTGCAGGACAGAGTGAAGAACTTTTACACCCGGCTGCCGTTCCAGAAGCTC ACCGGCCTTTCCATTAGACACAAAGTGCCCATGGCCGACAAGGCCATTTCCAGTGGCTTC TTCGAGTGTGAACGGCTGTGTGACGTGGACCCGTGCTGCACCGGCTTTGGCTTTCTGAAC GTTTCCCAGCTGAAAGGAGGAGAGGTGACGTGCCTAACTCTGAACAGCCTGGGACTTCAG ACGTGCAGCGAGGAAAACGGAGGAAGCTGGCGCCTGCTGGCCTGTGGCTCTCCTGACACT GAGGTCCGCACCTACCCCTTCGGCTGGTACCAGAAGCCTGCTGTTCAGAATGATGCTCCC AGTTTTTGCCCTTCAGCGGCCCTGCCTCCCGTCCCAGAGAAAGTTGCTCTGGACTCGTGG CAGCTGCTGCCCCCCTCTTCAGTGGTTGTTGATCCGTCCATCAGAAACTTTGACGTTGCC CACATCAGCACCGCAGCCGTCAGAGACTTCTCTGCTGCCCGAGAGCGCTGTTTGTTGGAA TGTTCCCGTCACCAGGCCTGCCTCGTCACCACCCTGCAGACCCGACCTGGTGCTGTGAGG TGTATGTTCTATGCTGATACTCAGAGCTGCACACACAGCCTGCAGGCCCAGAACTGCCAA CTTCTGCTCCGTGAAGAGGCCACCCACATCTACCGGAAGCCAGACATCCCTCTGCTCGGC TTGGGTTCATCTGCACCTACTGTGACCATTGCCACCCACGGCCAGCTGCTGGGCACGTCC CAGGCCATCCAGCTGGGCGCTTCGTGGAAGCAAGTGGACCAGTTCCTGGGAGTTCCGTAT GCCGCCCCTCCGCTGGCAGAGAGCCGCTTCCGGGCCCCGGAGCCCTTGAACTGGACAGGG ACCTGGGATGCCACCAAGCCACGGGCCAGCTGCTGGCAGCCAGGCATCAGACCGGCCACA GCTCCTGGGGTCAGCGAAGACTGTCTCTATCTCAGCGTGTTTGTCCCTCAGAGCCTGACC CCCAATTCATCTGTGCTGGTGTTCTTCCACAACGGCGCTGAGGGACCGCTGGCCATGGCC GTGGACGGCTCCTTCCTGGCTGCTGTTGGCAACCTCATCGTGGTCACCGCCAGCTACCGA ACGGGCGTCTTTGGCTTCCTGAGTTCCGGATCCAGCGAGGTGAGTGGCAACTGGGGGCTG CTGGACCAGGTGGCGGCTCTGACCTGGGTGCAGACCCACATCGGAGTGTTTGGCGGGGAC CCTCGGCGCGTGGCCCTGGCAGCAGACCGTGGCGGAGCCGACGTGGCTGGTATCCACCTT CTAACCAGCAGGGCCACCAACTCCAGACTCTTCCGGAGAGCGGTGCTGATGGGCGGCTCC GTGCTCTCCCCCGCCGCCGTCATCAGGCCGGACAGGGCTCAGCAGCAGGCAGCAGCTTTG GCCAAGGAGGTTGGCTGCCCCACCTCGTCCATCCCAGAAATGGTGTCCTGCCTCCGCCGG GAGCCTGCCAGCCTCCTCAATGACGCCCAGAGCAAGCTCCTGGCCGTGAGTGGCCCTTTT CACTACTGGGGTCCTGTGGTCGACGGCCAGCTCCTGCGAGAGGCGCCAGCCAGGGCACTG CAGCGGCCTCCACGGGCAAAGCTGGACCTGCTCATCGGGAGCTCTCAGGACGATGGGCTC ATCGACAGAGCCAAGGCCGTGAAGCGATTTGAGGAAAGTCAAGGCCGGACCAGTAGCAAA ACAGCCTTTTACCAGGCTCTGCAGAATTCTCTGGGCGGTGAAGCAGGGGACCCGGGAGTG CAGGCTGCGGCTACATGGTACTACTCCCTGGAGCACGATACCGACGACTACGCCTCCTTC TCCCGGGCCCTGGAGGCGGCCACCCGGGACTACTTTATCATCTGCCCTGTCATCGACATG GCCAGCCACTGGGCGAGGACGGCCCGGGGAAACGTCTTCATGTACCACGCTCCCGAAAGC TACAGCCACGGCAGCCTGGAAGTGCTGGCCGATGTCCGCTATGCCTTTGGGCTCCCCTTC TACCCCGCCTACGAGGGGCAGTTTACCCAGGAGGAGAAAAGCCTCTCCCTGAAAATCATG CAGTACTTTTCCAACTTCGTCCGATCTGGAAATCCCAACTACCCTCATGAGTTCTCCAGG AAAGCACCTGAATTTGCAGCCCCCTGGCCCGACTTTGTCCCGGGGGACGGGGCAGAGAGC TACAAGGAGCTCAGTGTCCTGCTCCCCAATCGACAGGGCCTGAAAAAGGCCGATTGCTCC TTCTGGTCCAAGTACATCTCGTCTCTGAAGGCCTCGGCAGATGAAGCTGAGGACGAGCCC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GAACTTTTCTCTCCTGTGGACTTGAACCAGGTCATTATCAGTGAGAACAGATCCCTCCCC AGCCAGCAGCACCGGCTTTTCAAACACCTGTTTTCCCTTCAGCAGGCACATCTATGGTGC CTTTCTCGCTGTGTCCAGGAGCCCTCTTTCTGTCAGCTGGCAGAGATAACAGACAGCTCA CCCTTGTACTTGACCTGTACCCTCTACCCAGAGGCCCAGGTGTGTGACGACGTCATGGAG GCCAGTCCCAGGGGCTGCAGACGGATCCTGCCCCGCAGGCCGAATGCCCTCTTCCAGAGG AGAGTTGTGCTGCAGGACAGAGTGAAGAACTTTTACACCCGGCTGCCGTTCCAGAAGCTC ACCGGCCTTTCCATTAGACACAAAGTGCCCATGGCCGACAAGGCCATTTCCAGTGGCTTC TTCGAGTGTGAACGGCTGTGTGACGTGGACCCGTGCTGCACCGGCTTTGGCTTTCTGAAC GTTTCCCAGCTGAAAGGAGGAGAGGTGACGTGCCTAACTCTGAACAGCCTGGGACTTCAG ACGTGCAGCGAGGAAAACGGAGGAAGCTGGCGCCTGCTGGCCTGTGGCTCTCCTGACACT GAGGTCCGCACCTACCCCTTCGGCTGGTACCAGAAGCCTGCTGTTCAGAATGATGCTCCC AGTTTTTGCCCTTCAGCGGCCCTGCCTCCCGTCCCAGAGAAAGTTGCTCTGGACTCGTGG CAGCTGCTGCCCCCCTCTTCAGTGGTTGTTGATCCGTCCATCAGAAACTTTGACGTTGCC CACATCAGCACCGCAGCCGTCAGAGACTTCTCTGCTGCCCGAGAGCGCTGTTTGTTGGAA TGTTCCCGTCACCAGGCCTGCCTCGTCACCACCCTGCAGACCCGACCTGGTGCTGTGAGG TGTATGTTCTATGCTGATACTCAGAGCTGCACACACAGCCTGCAGGCCCAGAACTGCCAA CTTCTGCTCCGTGAAGAGGCCACCCACATCTACCGGAAGCCAGACATCCCTCTGCTCGGC TTGGGTTCATCTGCACCTACTGTGACCATTGCCACCCACGGCCAGCTGCTGGGCACGTCC CAGGCCATCCAGCTGGGCGCTTCGTGGAAGCAAGTGGACCAGTTCCTGGGAGTTCCGTAT GCCGCCCCTCCGCTGGCAGAGAGCCGCTTCCGGGCCCCGGAGCCCTTGAACTGGACAGGG ACCTGGGATGCCACCAAGCCACGGGCCAGCTGCTGGCAGCCAGGCATCAGACCGGCCACA GCTCCTGGGGTCAGCGAAGACTGTCTCTATCTCAGCGTGTTTGTCCCTCAGAGCCTGACC CCCAATTCATCTGTGCTGGTGTTCTTCCACAACGGCGCTGAGGGACCGCTGGCCATGGCC GTGGACGGCTCCTTCCTGGCTGCTGTTGGCAACCTCATCGTGGTCACCGCCAGCTACCGA ACGGGCGTCTTTGGCTTCCTGAGTTCCGGATCCAGCGAGGTGAGTGGCAACTGGGGGCTG CTGGACCAGGTGGCGGCTCTGACCTGGGTGCAGACCCACATCGGAGTGTTTGGCGGGGAC CCTCGGCGCGTGGCCCTGGCAGCAGACCGTGGCGGAGCCGACGTGGCTGGTATCCACCTT CTAACCAGCAGGGCCACCAACTCCAGACTCTTCCGGAGAGCGGTGCTGATGGGCGGCTCC GTGCTCTCCCCCGCCGCCGTCATCAGGCCGGACAGGGCTCAGCAGCAGGCAGCAGCTTTG GCCAAGGAGGTTGGCTGCCCCACCTCGTCCATCCCAGAAATGGTGTCCTGCCTCCGCCGG GAGCCTGCCAGCCTCCTCAATGACGCCCAGAGCAAGCTCCTGGCCGTGAGTGGCCCTTTT CACTACTGGGGTCCTGTGGTCGACGGCCAGCTCCTGCGAGAGGCGCCAGCCAGGGCACTG CAGCGGCCTCCACGGGCAAAGCTGGACCTGCTCATCGGGAGCTCTCAGGACGATGGGCTC ATCGACAGAGCCAAGGCCGTGAAGCGATTTGAGGAAAGTCAAGGCCGGACCAGTAGCAAA ACAGCCTTTTACCAGGCTCTGCAGAATTCTCTGGGCGGTGAAGCAGGGGACCCGGGAGTG CAGGCTGCGGCTACATGGTACTACTCCCTGGAGCACGATACCGACGACTACGCCTCCTTC TCCCGGGCCCTGGAGGCGGCCACCCGGGACTACTTTATCATCTGCCCTGTCATCGACATG GCCAGCCACTGGGCGAGGACGGCCCGGGGAAACGTCTTCATGTACCACGCTCCCGAAAGC TACAGCCACGGCAGCCTGGAAGTGCTGGCCGATGTCCGCTATGCCTTTGGGCTCCCCTTC TACCCCGCCTACGAGGGGCAGTTTACCCAGGAGGAGAAAAGCCTCTCCCTGAAAATCATG CAGTACTTTTCCAACTTCGTCCGATCTGGAAATCCCAACTACCCTCATGAGTTCTCCAGG AAAGCACCTGAATTTGCAGCCCCCTGGCCCGACTTTGTCCCGGGGGACGGGGCAGAGAGC TACAAGGAGCTCAGTGTCCTGCTCCCCAATCGACAGGGCCTGAAAAAGGCCGATTGCTCC TTCTGGTCCAAGTACATCTCGTCTCTGAAGGCCTCGGCAGATGAAGCTGAGGACGAGCCC |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | More info |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
1578-1681, - strand, RNAz p=0.850322 | |
2002-2120, + strand, RNAz p=0.637538 |
Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
1578-1681, - strand, RNAz p=0.850322 | |
2002-2120, + strand, RNAz p=0.637538 |
Aligned organism(s): 73 entry(ies) | More info |
Aligned organism(s): 73 entry(ies) | Help | Less info |
108-311, gnl|bosTau2|chr14 (4543569-4543771) | |
108-311, gnl|Hg17|chr8 (134049202-134049404) | |
108-311, gnl|Mm7|chr15 (66821073-66821277) | |
495-640, gnl|bosTau2|chr14 (4548133-4548278) | |
495-640, gnl|canFam2|chr13 (32480853-32481115) | |
495-640, gnl|dasNov1|scaffold_132805 (973-710) | |
495-640, gnl|echTel1|scaffold_321037 (10965-11216) | |
495-640, gnl|hg17|chr8 (134053923-134054196) | |
495-640, gnl|Hg17|chr8 (134054023-134054168) | |
495-640, gnl|mm7|chr15 (66825077-66825335) | |
495-640, gnl|Mm7|chr15 (66825163-66825308) | |
495-640, gnl|monDom2|scaffold_3 (17342586-17342330) | |
495-640, gnl|oryCun1|scaffold_184906 (7579-7310) | |
495-640, gnl|panTro1|chr7 (137004136-137004404) | |
495-640, gnl|rheMac2|chr8 (135537797-135538071) | |
495-640, gnl|rn3|chr7 (104144084-104144341) | |
702-838, gnl|bosTau2|chr14 (4578217-4578353) | |
702-838, gnl|hg17|chr8 (134093297-134093429) | |
702-838, gnl|Hg17|chr8 (134093326-134093462) | |
702-838, gnl|mm7|chr15 (66841519-66841651) | |
702-838, gnl|Mm7|chr15 (66841548-66841684) | |
702-838, gnl|monDom2|scaffold_3 (17307872-17307740) | |
702-838, gnl|oryCun1|scaffold_200012 (18472-18340) | |
702-838, gnl|panTro1|chr7 (137073570-137073702) | |
702-838, gnl|rheMac2|chr8 (135575705-135575837) | |
702-838, gnl|rn3|chr7 (104159787-104159917) | |
702-838, gnl|tetNig1|chrUn_random (46813963-46814078) | |
1000-1224, gnl|bosTau2|chr14 (4586217-4586441) | |
1000-1224, gnl|Hg17|chr8 (134099181-134099425) | |
1000-1224, gnl|Mm7|chr15 (66847940-66848167) | |
1468-1687, gnl|bosTau2|chr14 (4597465-4597684) | |
1468-1687, gnl|canFam2|chr13 (32531938-32532177) | |
1468-1687, gnl|danRer3|chrNA (59676843-59676634) | |
1468-1687, gnl|echTel1|scaffold_321037 (38601-38824) | |
1468-1687, gnl|hg17|chr8 (134111240-134111482) | |
1468-1687, gnl|Hg17|chr8 (134111247-134111468) | |
1468-1687, gnl|loxAfr1|scaffold_47681 (3247-3008) | |
1468-1687, gnl|mm7|chr15 (66856950-66857190) | |
1468-1687, gnl|Mm7|chr15 (66856957-66857176) | |
1468-1687, gnl|monDom2|scaffold_3 (17281227-17280993) | |
1468-1687, gnl|oryCun1|scaffold_200012 (2574-2334) | |
1468-1687, gnl|panTro1|chr7_random (10164141-10164383) | |
1468-1687, gnl|rheMac2|chr8 (135593637-135593879) | |
1468-1687, gnl|rn3|chr7 (104174170-104174410) | |
1468-1687, gnl|tetNig1|chrUn_random (46815222-46815405) | |
2002-2187, gnl|bosTau2|chr14 (4676100-4676285) | |
2002-2187, gnl|canFam2|chr13 (32614474-32614685) | |
2002-2187, gnl|dasNov1|scaffold_47919 (7798-7607) | |
2002-2187, gnl|galGal2|chr2 (141925403-141925205) | |
2002-2187, gnl|hg17|chr8 (134194834-134195035) | |
2002-2187, gnl|Hg17|chr8 (134194845-134195030) | |
2002-2187, gnl|loxAfr1|scaffold_87859 (29718-29521) | |
2002-2187, gnl|mm7|chr15 (66921556-66921808) | |
2002-2187, gnl|Mm7|chr15 (66921618-66921803) | |
2002-2187, gnl|monDom2|scaffold_3 (17164983-17164771) | |
2002-2187, gnl|oryCun1|scaffold_107665 (15373-15180) | |
2002-2187, gnl|panTro1|chr7 (137175437-137175641) | |
2002-2187, gnl|rheMac2|chr8 (135677723-135677926) | |
2002-2187, gnl|rn3|chr7 (104242758-104243047) | |
2002-2187, gnl|xenTro1|scaffold_976 (146703-146900) | |
2429-2623, gnl|bosTau2|chr14 (4700074-4700268) | |
2429-2623, gnl|canFam2|chr13 (32633034-32633280) | |
2429-2623, gnl|echTel1|scaffold_279667 (43064-42817) | |
2429-2623, gnl|hg17|chr8 (134214868-134215117) | |
2429-2623, gnl|Hg17|chr8 (134214895-134215111) | |
2429-2623, gnl|loxAfr1|scaffold_14015 (26492-26241) | |
2429-2623, gnl|mm7|chr15 (66933095-66933338) | |
2429-2623, gnl|Mm7|chr15 (66933119-66933310) | |
2429-2623, gnl|monDom2|scaffold_3 (17123794-17123561) | |
2429-2623, gnl|oryCun1|scaffold_107665 (441-192) | |
2429-2623, gnl|panTro1|chr7 (137195497-137195746) | |
2429-2623, gnl|rheMac2|chr8 (135701037-135701286) | |
2429-2623, gnl|rn3|chr7 (104253856-104254097) |
Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
108-311, gnl|bosTau2|chr14 (4543569-4543771) | |
108-311, gnl|Hg17|chr8 (134049202-134049404) | |
108-311, gnl|Mm7|chr15 (66821073-66821277) | |
495-640, gnl|bosTau2|chr14 (4548133-4548278) | |
495-640, gnl|canFam2|chr13 (32480853-32481115) | |
495-640, gnl|dasNov1|scaffold_132805 (973-710) | |
495-640, gnl|echTel1|scaffold_321037 (10965-11216) | |
495-640, gnl|hg17|chr8 (134053923-134054196) | |
495-640, gnl|Hg17|chr8 (134054023-134054168) | |
495-640, gnl|mm7|chr15 (66825077-66825335) | |
495-640, gnl|Mm7|chr15 (66825163-66825308) | |
495-640, gnl|monDom2|scaffold_3 (17342586-17342330) | |
495-640, gnl|oryCun1|scaffold_184906 (7579-7310) | |
495-640, gnl|panTro1|chr7 (137004136-137004404) | |
495-640, gnl|rheMac2|chr8 (135537797-135538071) | |
495-640, gnl|rn3|chr7 (104144084-104144341) | |
702-838, gnl|bosTau2|chr14 (4578217-4578353) | |
702-838, gnl|hg17|chr8 (134093297-134093429) | |
702-838, gnl|Hg17|chr8 (134093326-134093462) | |
702-838, gnl|mm7|chr15 (66841519-66841651) | |
702-838, gnl|Mm7|chr15 (66841548-66841684) | |
702-838, gnl|monDom2|scaffold_3 (17307872-17307740) | |
702-838, gnl|oryCun1|scaffold_200012 (18472-18340) | |
702-838, gnl|panTro1|chr7 (137073570-137073702) | |
702-838, gnl|rheMac2|chr8 (135575705-135575837) | |
702-838, gnl|rn3|chr7 (104159787-104159917) | |
702-838, gnl|tetNig1|chrUn_random (46813963-46814078) | |
1000-1224, gnl|bosTau2|chr14 (4586217-4586441) | |
1000-1224, gnl|Hg17|chr8 (134099181-134099425) | |
1000-1224, gnl|Mm7|chr15 (66847940-66848167) | |
1468-1687, gnl|bosTau2|chr14 (4597465-4597684) | |
1468-1687, gnl|canFam2|chr13 (32531938-32532177) | |
1468-1687, gnl|danRer3|chrNA (59676843-59676634) | |
1468-1687, gnl|echTel1|scaffold_321037 (38601-38824) | |
1468-1687, gnl|hg17|chr8 (134111240-134111482) | |
1468-1687, gnl|Hg17|chr8 (134111247-134111468) | |
1468-1687, gnl|loxAfr1|scaffold_47681 (3247-3008) | |
1468-1687, gnl|mm7|chr15 (66856950-66857190) | |
1468-1687, gnl|Mm7|chr15 (66856957-66857176) | |
1468-1687, gnl|monDom2|scaffold_3 (17281227-17280993) | |
1468-1687, gnl|oryCun1|scaffold_200012 (2574-2334) | |
1468-1687, gnl|panTro1|chr7_random (10164141-10164383) | |
1468-1687, gnl|rheMac2|chr8 (135593637-135593879) | |
1468-1687, gnl|rn3|chr7 (104174170-104174410) | |
1468-1687, gnl|tetNig1|chrUn_random (46815222-46815405) | |
2002-2187, gnl|bosTau2|chr14 (4676100-4676285) | |
2002-2187, gnl|canFam2|chr13 (32614474-32614685) | |
2002-2187, gnl|dasNov1|scaffold_47919 (7798-7607) | |
2002-2187, gnl|galGal2|chr2 (141925403-141925205) | |
2002-2187, gnl|hg17|chr8 (134194834-134195035) | |
2002-2187, gnl|Hg17|chr8 (134194845-134195030) | |
2002-2187, gnl|loxAfr1|scaffold_87859 (29718-29521) | |
2002-2187, gnl|mm7|chr15 (66921556-66921808) | |
2002-2187, gnl|Mm7|chr15 (66921618-66921803) | |
2002-2187, gnl|monDom2|scaffold_3 (17164983-17164771) | |
2002-2187, gnl|oryCun1|scaffold_107665 (15373-15180) | |
2002-2187, gnl|panTro1|chr7 (137175437-137175641) | |
2002-2187, gnl|rheMac2|chr8 (135677723-135677926) | |
2002-2187, gnl|rn3|chr7 (104242758-104243047) | |
2002-2187, gnl|xenTro1|scaffold_976 (146703-146900) | |
2429-2623, gnl|bosTau2|chr14 (4700074-4700268) | |
2429-2623, gnl|canFam2|chr13 (32633034-32633280) | |
2429-2623, gnl|echTel1|scaffold_279667 (43064-42817) | |
2429-2623, gnl|hg17|chr8 (134214868-134215117) | |
2429-2623, gnl|Hg17|chr8 (134214895-134215111) | |
2429-2623, gnl|loxAfr1|scaffold_14015 (26492-26241) | |
2429-2623, gnl|mm7|chr15 (66933095-66933338) | |
2429-2623, gnl|Mm7|chr15 (66933119-66933310) | |
2429-2623, gnl|monDom2|scaffold_3 (17123794-17123561) | |
2429-2623, gnl|oryCun1|scaffold_107665 (441-192) | |
2429-2623, gnl|panTro1|chr7 (137195497-137195746) | |
2429-2623, gnl|rheMac2|chr8 (135701037-135701286) | |
2429-2623, gnl|rn3|chr7 (104253856-104254097) |
Expressed library(ies): 1 entry(ies) | More info |
Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cty (9.67943) |