Ss1.1-rpigcb_14105.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATTATGGGCACTGGCCGGATGTAAACGAAGCCTTAGTGGAAGGGGTGAAAGCGATCCA GATTGATACCTGGTTACAGGTCATACCTCAGCTCATTGCAAGAATCGATACGCCCAGGCC CTTGGCGGGGCGTCTCATTCACCAGCTTCTCACAGACATCGGTCGGTACCACCCCCAGGC CCTCATCTACCCCCTGACGGTGGCGTCTAAGTCCACCACCACCGCCCGGCACAACGCGGC CAACAAGATCCTGAAGAACATGTGTGAGCACAGCAACACCCTGGTGCAGCAGGCCATGAT GGTGAGCGAGGAGCTGATCCGAGTGGCCATCCTCTGGCACGAGATGTGGCACGAAGGCCT GGAAGAGGCGTCTCGCTTGTACTTCGGGGAGAGGAACGTGAAAGGCATGTTCGAGGTGCT GGAGCCCCTGCACGCCATGATGGAGCGGGGACCCCAGACCCTGAAGGAGACCTCCTTTAA CCAGGCATACGGTCGAGACTTAATGGAGGCCCAGGAGTGGTGCAGGAAGTACATGAAATC CGGGAACGTCAAGGACCTCACCCAGGCCTGGGACCTCTATTACCACGTGTTCAGGCGCAT CTCGAAGCAGCTGCCGCAGCTCACATCCCTAGAGCTGCAGTATGTTTCCCCCAAACTCCT GATGTGCCGGGACCTTGAATTGGCTGTGCCAGGAACCTATGACCCCAACCAGCCCATCAT TCGCATTCAGTCCATAGCGCCGTCTCTGCAGGTCATCACGTCCAAGCAGAGGCCCCGGAA GCTGACACTTATGGGCAGCAACGGCCACGAGTTCGTCTTCCTCCTGAAGGGCCACGAAGA CCTGCGGCAGGACGAGCGCGTCATGCAGCTCTTCGGCCTGGTCAACACCCTTTTGGCCAA CGACCCAACGTCTCTCCGCAAGAACCTCAGCATCCAGAGGTACGCCGTCATCCCCTTATC CACCAACTCGGGCCTCATCGGCTGGGTCCCCCACTGTGACACACTGCACGCCCTCATCCG GGACTACAGGGAGAAGAAGAAGATCCTTCTCAACATCGAGCATCGCATCATGCTGCGGAT GGCTCCGGACTACGACCACCTGACCCTGATGCAGAAGGTCGAGGTGTTCGAGCACGCCGT CAACAACACCGCCGGCGATGACCTGGCCAAGCTGCTGTGGCTGAAAAGCCCCAGCTCCGA GGTGTGGTTTGATCGAAGAACCAACTACACTCGCTCTTTAGCAGTCATGTCCATGGTTGG GTATATTTTGGGCCTGGGCGATAGACACCCATCTAACCTGATGCTGGACCGGCTGAGCGG GAAGATCCTGCACATTGACTTTGGGGACTGCTTTGAGGTTGCTATGACCAGAGAGAAGTT CCCAGAGAAGATTCCATTTAGACTAACGAGAATGTTGACCAATGCTATGGAGGTCACTGG TCTGGATGGCAACTACAGGATCACGTGCCACACGGTCATGGAAGTGCTTCGGGAACACAA GGACAGCGTCATGGCCGTGCTGGAAGCCTTCGTCTATGACCCCTTACTGAACTGGAGGCT GATGGACAGTGAGTAGCTCGTGCCTGAGAACTGGAGTCTGCACCTCCCAACGTGGGAGTG TTGGCGTGCTCCGTGTCTCTGACCTGTCCCCCTCACACCCGGAGCCTGAGGCGCTGCCCA GCCACCTGCGTTACATTTTCACAGAGCAGCTCTGGTGGCTGGAAATGAACTTTGCAAGTA TTTTTATTAACT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATTATGGGCACTGGCCGGATGTAAACGAAGCCTTAGTGGAAGGGGTGAAAGCGATCCA GATTGATACCTGGTTACAGGTCATACCTCAGCTCATTGCAAGAATCGATACGCCCAGGCC CTTGGCGGGGCGTCTCATTCACCAGCTTCTCACAGACATCGGTCGGTACCACCCCCAGGC CCTCATCTACCCCCTGACGGTGGCGTCTAAGTCCACCACCACCGCCCGGCACAACGCGGC CAACAAGATCCTGAAGAACATGTGTGAGCACAGCAACACCCTGGTGCAGCAGGCCATGAT GGTGAGCGAGGAGCTGATCCGAGTGGCCATCCTCTGGCACGAGATGTGGCACGAAGGCCT GGAAGAGGCGTCTCGCTTGTACTTCGGGGAGAGGAACGTGAAAGGCATGTTCGAGGTGCT GGAGCCCCTGCACGCCATGATGGAGCGGGGACCCCAGACCCTGAAGGAGACCTCCTTTAA CCAGGCATACGGTCGAGACTTAATGGAGGCCCAGGAGTGGTGCAGGAAGTACATGAAATC CGGGAACGTCAAGGACCTCACCCAGGCCTGGGACCTCTATTACCACGTGTTCAGGCGCAT CTCGAAGCAGCTGCCGCAGCTCACATCCCTAGAGCTGCAGTATGTTTCCCCCAAACTCCT GATGTGCCGGGACCTTGAATTGGCTGTGCCAGGAACCTATGACCCCAACCAGCCCATCAT TCGCATTCAGTCCATAGCGCCGTCTCTGCAGGTCATCACGTCCAAGCAGAGGCCCCGGAA GCTGACACTTATGGGCAGCAACGGCCACGAGTTCGTCTTCCTCCTGAAGGGCCACGAAGA CCTGCGGCAGGACGAGCGCGTCATGCAGCTCTTCGGCCTGGTCAACACCCTTTTGGCCAA CGACCCAACGTCTCTCCGCAAGAACCTCAGCATCCAGAGGTACGCCGTCATCCCCTTATC CACCAACTCGGGCCTCATCGGCTGGGTCCCCCACTGTGACACACTGCACGCCCTCATCCG GGACTACAGGGAGAAGAAGAAGATCCTTCTCAACATCGAGCATCGCATCATGCTGCGGAT GGCTCCGGACTACGACCACCTGACCCTGATGCAGAAGGTCGAGGTGTTCGAGCACGCCGT CAACAACACCGCCGGCGATGACCTGGCCAAGCTGCTGTGGCTGAAAAGCCCCAGCTCCGA GGTGTGGTTTGATCGAAGAACCAACTACACTCGCTCTTTAGCAGTCATGTCCATGGTTGG GTATATTTTGGGCCTGGGCGATAGACACCCATCTAACCTGATGCTGGACCGGCTGAGCGG GAAGATCCTGCACATTGACTTTGGGGACTGCTTTGAGGTTGCTATGACCAGAGAGAAGTT CCCAGAGAAGATTCCATTTAGACTAACGAGAATGTTGACCAATGCTATGGAGGTCACTGG TCTGGATGGCAACTACAGGATCACGTGCCACACGGTCATGGAAGTGCTTCGGGAACACAA GGACAGCGTCATGGCCGTGCTGGAAGCCTTCGTCTATGACCCCTTACTGAACTGGAGGCT GATGGACAGTGAGTAGCTCGTGCCTGAGAACTGGAGTCTGCACCTCCCAACGTGGGAGTG TTGGCGTGCTCCGTGTCTCTGACCTGTCCCCCTCACACCCGGAGCCTGAGGCGCTGCCCA GCCACCTGCGTTACATTTTCACAGAGCAGCTCTGGTGGCTGGAAATGAACTTTGCAAGTA TTTTTATTAACT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | More info |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
| 77-179, gnl|bosTau2|chr16 (22162862-22162964) | |
| 77-179, gnl|canFam2|chr2 (87807649-87807530) | |
| 77-179, gnl|danRer3|chr8 (39009287-39009394) | |
| 77-179, gnl|dasNov1|scaffold_45133 (42803-42921) | |
| 77-179, gnl|echTel1|scaffold_318606 (95135-95016) | |
| 77-179, gnl|fr1|chrUn (35348687-35348569) | |
| 77-179, gnl|galGal2|chr21 (3995577-3995684) | |
| 77-179, gnl|hg17|chr1 (11122763-11122882) | |
| 77-179, gnl|Hg17|chr1 (11122878-11122776) | |
| 77-179, gnl|loxAfr1|scaffold_30211 (17628-17747) | |
| 77-179, gnl|mm7|chr4 (147527932-147527813) | |
| 77-179, gnl|Mm7|chr4 (147527815-147527917) | |
| 77-179, gnl|monDom2|scaffold_175 (1090858-1090739) | |
| 77-179, gnl|oryCun1|scaffold_201999 (42068-42187) | |
| 77-179, gnl|panTro1|chr1_random (4144886-4145005) | |
| 77-179, gnl|rheMac2|chr1 (14237127-14237246) | |
| 77-179, gnl|rn3|chr5 (165632628-165632509) | |
| 77-179, gnl|tetNig1|chrUn_random (28032998-28032889) | |
| 301-485, gnl|bosTau2|chr16 (22163590-22163774) | |
| 301-485, gnl|canFam2|chr2 (87808398-87808190) | |
| 301-485, gnl|danRer3|chr8 (38999757-38999962) | |
| 301-485, gnl|dasNov1|scaffold_45133 (42020-42233) | |
| 301-485, gnl|echTel1|scaffold_318606 (95836-95630) | |
| 301-485, gnl|fr1|chrUn (35349337-35349133) | |
| 301-485, gnl|galGal2|chr21 (3994063-3994275) | |
| 301-485, gnl|hg17|chr1 (11121944-11122152) | |
| 301-485, gnl|Hg17|chr1 (11122130-11121939) | |
| 301-485, gnl|mm7|chr4 (147528457-147528250) | |
| 301-485, gnl|Mm7|chr4 (147528269-147528453) | |
| 301-485, gnl|monDom2|scaffold_175 (1091679-1091486) | |
| 301-485, gnl|oryCun1|scaffold_201999 (41501-41704) | |
| 301-485, gnl|panTro1|chr1_random (4144063-4144271) | |
| 301-485, gnl|rheMac2|chr1 (14236314-14236522) | |
| 301-485, gnl|rn3|chr5 (165633148-165632941) | |
| 301-485, gnl|tetNig1|chrUn_random (28033678-28033481) | |
| 301-485, gnl|xenTro1|scaffold_522 (904508-904710) | |
| 617-795, gnl|bosTau2|chr16 (22164513-22164691) | |
| 617-795, gnl|canFam2|chr2 (87809324-87809146) | |
| 617-795, gnl|danRer3|chr8 (38993406-38993585) | |
| 617-795, gnl|dasNov1|scaffold_50295 (186-5) | |
| 617-795, gnl|echTel1|scaffold_318606 (97037-96856) | |
| 617-795, gnl|fr1|chrUn (35351884-35351732) | |
| 617-795, gnl|galGal2|chr21 (3992775-3992945) | |
| 617-795, gnl|hg17|chr1 (11120913-11121093) | |
| 617-795, gnl|Hg17|chr1 (11121122-11120944) | |
| 617-795, gnl|loxAfr1|scaffold_30211 (15438-15618) | |
| 617-795, gnl|mm7|chr4 (147530012-147529855) | |
| 617-795, gnl|Mm7|chr4 (147529824-147530002) | |
| 617-795, gnl|monDom2|scaffold_175 (1095021-1094847) | |
| 617-795, gnl|oryCun1|scaffold_154409 (4023-4196) | |
| 617-795, gnl|panTro1|chr1_random (4143031-4143211) | |
| 617-795, gnl|rheMac2|chr1 (14235324-14235504) | |
| 617-795, gnl|rn3|chr5 (165634646-165634489) | |
| 617-795, gnl|tetNig1|chrUn_random (28035655-28035503) | |
| 617-795, gnl|xenTro1|scaffold_522 (902902-903052) | |
| 929-1078, gnl|bosTau2|chr16 (22166693-22166842) | |
| 929-1078, gnl|canFam2|chr2 (87811520-87811364) | |
| 929-1078, gnl|danRer3|chr8 (38984747-38984900) | |
| 929-1078, gnl|echTel1|scaffold_318606 (99553-99393) | |
| 929-1078, gnl|fr1|chrUn (35353960-35353807) | |
| 929-1078, gnl|galGal2|chr21 (3991697-3991853) | |
| 929-1078, gnl|hg17|chr1 (11116296-11116456) | |
| 929-1078, gnl|Hg17|chr1 (11116451-11116302) | |
| 929-1078, gnl|loxAfr1|scaffold_30211 (12840-13000) | |
| 929-1078, gnl|mm7|chr4 (147535207-147535047) | |
| 929-1078, gnl|Mm7|chr4 (147535050-147535199) | |
| 929-1078, gnl|monDom2|scaffold_175 (1097620-1097460) | |
| 929-1078, gnl|oryCun1|scaffold_204355 (866-706) | |
| 929-1078, gnl|panTro1|chr1_random (4138426-4138586) | |
| 929-1078, gnl|rheMac2|chr1 (14230721-14230881) | |
| 929-1078, gnl|rn3|chr5 (165639027-165638867) | |
| 929-1078, gnl|tetNig1|chrUn_random (28037883-28037728) | |
| 929-1078, gnl|xenTro1|scaffold_522 (897678-897834) | |
| 1428-1752, gnl|bosTau2|chr16 (22171032-22171351) | |
| 1428-1752, gnl|Hg17|chr1 (11108781-11107711) |
| Aligned organism(s): 75 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 77-179, gnl|bosTau2|chr16 (22162862-22162964) | |
| 77-179, gnl|canFam2|chr2 (87807649-87807530) | |
| 77-179, gnl|danRer3|chr8 (39009287-39009394) | |
| 77-179, gnl|dasNov1|scaffold_45133 (42803-42921) | |
| 77-179, gnl|echTel1|scaffold_318606 (95135-95016) | |
| 77-179, gnl|fr1|chrUn (35348687-35348569) | |
| 77-179, gnl|galGal2|chr21 (3995577-3995684) | |
| 77-179, gnl|hg17|chr1 (11122763-11122882) | |
| 77-179, gnl|Hg17|chr1 (11122878-11122776) | |
| 77-179, gnl|loxAfr1|scaffold_30211 (17628-17747) | |
| 77-179, gnl|mm7|chr4 (147527932-147527813) | |
| 77-179, gnl|Mm7|chr4 (147527815-147527917) | |
| 77-179, gnl|monDom2|scaffold_175 (1090858-1090739) | |
| 77-179, gnl|oryCun1|scaffold_201999 (42068-42187) | |
| 77-179, gnl|panTro1|chr1_random (4144886-4145005) | |
| 77-179, gnl|rheMac2|chr1 (14237127-14237246) | |
| 77-179, gnl|rn3|chr5 (165632628-165632509) | |
| 77-179, gnl|tetNig1|chrUn_random (28032998-28032889) | |
| 301-485, gnl|bosTau2|chr16 (22163590-22163774) | |
| 301-485, gnl|canFam2|chr2 (87808398-87808190) | |
| 301-485, gnl|danRer3|chr8 (38999757-38999962) | |
| 301-485, gnl|dasNov1|scaffold_45133 (42020-42233) | |
| 301-485, gnl|echTel1|scaffold_318606 (95836-95630) | |
| 301-485, gnl|fr1|chrUn (35349337-35349133) | |
| 301-485, gnl|galGal2|chr21 (3994063-3994275) | |
| 301-485, gnl|hg17|chr1 (11121944-11122152) | |
| 301-485, gnl|Hg17|chr1 (11122130-11121939) | |
| 301-485, gnl|mm7|chr4 (147528457-147528250) | |
| 301-485, gnl|Mm7|chr4 (147528269-147528453) | |
| 301-485, gnl|monDom2|scaffold_175 (1091679-1091486) | |
| 301-485, gnl|oryCun1|scaffold_201999 (41501-41704) | |
| 301-485, gnl|panTro1|chr1_random (4144063-4144271) | |
| 301-485, gnl|rheMac2|chr1 (14236314-14236522) | |
| 301-485, gnl|rn3|chr5 (165633148-165632941) | |
| 301-485, gnl|tetNig1|chrUn_random (28033678-28033481) | |
| 301-485, gnl|xenTro1|scaffold_522 (904508-904710) | |
| 617-795, gnl|bosTau2|chr16 (22164513-22164691) | |
| 617-795, gnl|canFam2|chr2 (87809324-87809146) | |
| 617-795, gnl|danRer3|chr8 (38993406-38993585) | |
| 617-795, gnl|dasNov1|scaffold_50295 (186-5) | |
| 617-795, gnl|echTel1|scaffold_318606 (97037-96856) | |
| 617-795, gnl|fr1|chrUn (35351884-35351732) | |
| 617-795, gnl|galGal2|chr21 (3992775-3992945) | |
| 617-795, gnl|hg17|chr1 (11120913-11121093) | |
| 617-795, gnl|Hg17|chr1 (11121122-11120944) | |
| 617-795, gnl|loxAfr1|scaffold_30211 (15438-15618) | |
| 617-795, gnl|mm7|chr4 (147530012-147529855) | |
| 617-795, gnl|Mm7|chr4 (147529824-147530002) | |
| 617-795, gnl|monDom2|scaffold_175 (1095021-1094847) | |
| 617-795, gnl|oryCun1|scaffold_154409 (4023-4196) | |
| 617-795, gnl|panTro1|chr1_random (4143031-4143211) | |
| 617-795, gnl|rheMac2|chr1 (14235324-14235504) | |
| 617-795, gnl|rn3|chr5 (165634646-165634489) | |
| 617-795, gnl|tetNig1|chrUn_random (28035655-28035503) | |
| 617-795, gnl|xenTro1|scaffold_522 (902902-903052) | |
| 929-1078, gnl|bosTau2|chr16 (22166693-22166842) | |
| 929-1078, gnl|canFam2|chr2 (87811520-87811364) | |
| 929-1078, gnl|danRer3|chr8 (38984747-38984900) | |
| 929-1078, gnl|echTel1|scaffold_318606 (99553-99393) | |
| 929-1078, gnl|fr1|chrUn (35353960-35353807) | |
| 929-1078, gnl|galGal2|chr21 (3991697-3991853) | |
| 929-1078, gnl|hg17|chr1 (11116296-11116456) | |
| 929-1078, gnl|Hg17|chr1 (11116451-11116302) | |
| 929-1078, gnl|loxAfr1|scaffold_30211 (12840-13000) | |
| 929-1078, gnl|mm7|chr4 (147535207-147535047) | |
| 929-1078, gnl|Mm7|chr4 (147535050-147535199) | |
| 929-1078, gnl|monDom2|scaffold_175 (1097620-1097460) | |
| 929-1078, gnl|oryCun1|scaffold_204355 (866-706) | |
| 929-1078, gnl|panTro1|chr1_random (4138426-4138586) | |
| 929-1078, gnl|rheMac2|chr1 (14230721-14230881) | |
| 929-1078, gnl|rn3|chr5 (165639027-165638867) | |
| 929-1078, gnl|tetNig1|chrUn_random (28037883-28037728) | |
| 929-1078, gnl|xenTro1|scaffold_522 (897678-897834) | |
| 1428-1752, gnl|bosTau2|chr16 (22171032-22171351) | |
| 1428-1752, gnl|Hg17|chr1 (11108781-11107711) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |