Non-Coding RNA Search

Ss1.1-rpigcb_1416.5

Sequence:


               
               GGCGACTTTCTAGAAGGAAGAGTATTGTGGACACTGTATCCATTCAGGTGGATATTTTAC
CCAACAGCATTCCTTCCGATGATGTGGTTAGTAATACTGAAGAAATCACCTTTGAAGCAT
TAAAGAAAGCAATTGATACCAACGGACTGGAAGAACAGGAAAAGGAAAAGCGGCGTCTAG
TGATAGAGAAGTTCCAGAAAGCACCTTTTGAAGAAATAGCAGCACAGTGTGAGTCCAAAG
CAAATTTGCTTCATGATAGACTTGCTCAAATATTGGAACTGACCATACGTCCTCCTCCCA
GTCCATCAGGGACCCTCGCCATCACTTCTGGGCACGCCCAATACCAGTCTGTCCCAGTCT
ACGAGATGAAGTTTCCAGATCTCTGTGTGTACTAAGTGGCTCAGGAAGACCTCAGCATAA
AGCCTAAAAATGAGGGCCAGGCTGAGGTTTCAGGGTGTACTTGATGTTTGATAACATACG
TCTTGAAAACTACGATGGAACTTACCTTTAACCAAATGCTTGGCGTATCAGATTAGAAAT
TGTGCAACTGTAGCATATGATTTAGAGTACTTTTGAAGATAGGTTTATGCCGTGTGAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGACTTTCTAGAAGGAAGAGTATTGTGGACACTGTATCCATTCAGGTGGATATTTTAC
CCAACAGCATTCCTTCCGATGATGTGGTTAGTAATACTGAAGAAATCACCTTTGAAGCAT
TAAAGAAAGCAATTGATACCAACGGACTGGAAGAACAGGAAAAGGAAAAGCGGCGTCTAG
TGATAGAGAAGTTCCAGAAAGCACCTTTTGAAGAAATAGCAGCACAGTGTGAGTCCAAAG
CAAATTTGCTTCATGATAGACTTGCTCAAATATTGGAACTGACCATACGTCCTCCTCCCA
GTCCATCAGGGACCCTCGCCATCACTTCTGGGCACGCCCAATACCAGTCTGTCCCAGTCT
ACGAGATGAAGTTTCCAGATCTCTGTGTGTACTAAGTGGCTCAGGAAGACCTCAGCATAA
AGCCTAAAAATGAGGGCCAGGCTGAGGTTTCAGGGTGTACTTGATGTTTGATAACATACG
TCTTGAAAACTACGATGGAACTTACCTTTAACCAAATGCTTGGCGTATCAGATTAGAAAT
TGTGCAACTGTAGCATATGATTTAGAGTACTTTTGAAGATAGGTTTATGCCGTGTGAATT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55962485|emb|CAI11752.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55962485|emb|CAI11752.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               132-243, gnl|bosTau2|chr14 (4912859-4912748)
               

               
               132-243, gnl|Hg17|chr8 (133084028-133084139)
               

               
               132-243, gnl|Mm7|chr15 (65950090-65950201)
               


               
               291-600, gnl|bosTau2|chr14 (4907889-4907603)
               

               
               291-600, gnl|Hg17|chr8 (133092220-133092533)
               

               
               291-600, gnl|Mm7|chr15 (65954524-65954833)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               132-243, gnl|bosTau2|chr14 (4912859-4912748)
               

               
               132-243, gnl|Hg17|chr8 (133084028-133084139)
               

               
               132-243, gnl|Mm7|chr15 (65950090-65950201)
               


               
               291-600, gnl|bosTau2|chr14 (4907889-4907603)
               

               
               291-600, gnl|Hg17|chr8 (133092220-133092533)
               

               
               291-600, gnl|Mm7|chr15 (65954524-65954833)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cty (0.10408)

	132-243, gnl\|bosTau2\|chr14 (4912859-4912748)
	132-243, gnl\|Hg17\|chr8 (133084028-133084139)
	132-243, gnl\|Mm7\|chr15 (65950090-65950201)

	291-600, gnl\|bosTau2\|chr14 (4907889-4907603)
	291-600, gnl\|Hg17\|chr8 (133092220-133092533)
	291-600, gnl\|Mm7\|chr15 (65954524-65954833)