Ss1.1-rpigcb_14188.5.72
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCACACACAGCCTGCAGGCCCAGAACTGCCAACTTCTGCTCCGTGAAGAGGCCACCCACA TCTACCGGAAGCCAGACATCCCTCTGCTCGGCTTGGGTTCATCTGCACCTACTGTGACCA TTGCCACCCACGGCCAGCTGCTGGGCACGTCCCAGGCCATCCAGCTGGGCGCTTCGTGGA AGCAAGTGGACCAGTTCCTGGGAGTTCCGTATGCCGCCCCTCCGCTGGCAGAGAGCCGCT TCCGGGCCCCGGAGCCCTTGAACTGGACAGGGACCTGGGATGCCACCAAGCCACGGGCCA GCTGCTGGCAGCCAGGCATCAGACCGGCCACAGCTCCTGGGGTCAGCGAAGACTGTCTCT ATCTCAGCGTGTTTGTCCCTCAGAGCCTGACCCCCAACGCATCCGTGCTGGTGTTCTTCC ACAACGGCGCCGAGGGACCGCTGGCCATGGCCGTGGACGGCTCCTTCCTGGCTGCTGTTG GCAACCTCATTGTGGTCACTGCCAGCTACCGAACGGGCGTCTTTGGCTTCCTGAGTTCCG GATCCAGCGAGGTGAGTGGCAACTGGGGGCTGCTGGACCAGGTGGCGGCTCTGACCTGGG TGCAGACCCACATCGGAGTGTTTGGCGGGGACCCTCGGCGCGTGGCCCTGGCAGCAGACC GTGGCGGAGCCGACGTGGCTGGTATCCATCTTCTAACCAGCAGGGCCACCAACTCCAGAC TCTTCCGGAGAGCGGTGCTGATGGGCGGCTCCGTGCTCTCCCCCGCCGCCGTCATCAGGC CGGACAGGGCTCAGCAGCAGGCAGCAGCTTTGGCCAAGGAGGTTGGCTGCCCCACCTCGT CCATCCCAGAAATGGTGTCCTGCCTCCGCCAGGAGCCTGCCAGCCTCCTCAATGACGCCC AGAGCAAGCTCCTGGCCGTGAGTGGCCCTTTTCACTACTGGGGTCCTGTGGTCGACGGCC AGCTCCTGCGAGAGGCGCCAGCCAGGGCACTGCAGCGGCCTCCACGGGCAAAGCTGGACC TGCTCATCGGGAGCTCTCAGGACGATGGGCTCATCGACAGAGCCAAGGCCGTGAAGCGAT TTGAGGAAAGTCAAGGCCGGACCAGTAGCAAAACAGCCTTTTACCAGGCTCTGCAGAATT CTCTGGGCGGTGAAGCGGGGGACCCGGGAGTGCAGGCTGCGGCCACATGGTACTACTCCC TGGAGCACGATACCGACGACTACGCCTCCTTCTCCCGGGCCCTGGAGGCGGCCACCCGGG ACTACTTTATCATCTGCCCTGTCATCGACATGGCCAGCCACTGGGCGAGGACGGCCCGGG GAAACGTCTTCATGTACCACGCTCCCGAAAGCTACAGCCACGGCAGCCTGGAACTGCTGG CCGATGTCCGCTATGCCTTTGGGCTCCCCTTCTACCCCGCCTACGAGGGGCAGTTTACCC AGGAGGAGAAAAGCCTCTCCCTGAAAATCATGCAGTACTTTTCCAACTTCGTCCGATCTG GAAATCCCAACTACCCTCATGAGTTCTCCAGGAAAGCACCTGAATTTGCAGCCCCCTGGC CCGACTTTGTCCCGGGAGACGGGGCAGAGAGCTACAAGGAGCTCAGTGTCCTGCTCCCCA ATCGACAGGGCCTGAAAAAGGCCGACTGCTCCTTCTGGTCCAAGTACATCTCGTCTCTGA AGGCCTCGGCAGATGAAGCTGAGGACGAGCCCTTAGCAGAGAGTGAAGAAGAGGACCGGC CTGGGCTGACAGAAGACCTCCTGGGGCTCCCGGAGTTAGCTTCCAAGAGCTACAGCAAGT GATAGCCCCTGGGGAGCCCCCCCCCTGCCAGCTGCCCCCTGGGCGGCTTATTCTCCTACA CAGACACTCACTTTCAATAAAGGCTCTACCTGCAGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCACACACAGCCTGCAGGCCCAGAACTGCCAACTTCTGCTCCGTGAAGAGGCCACCCACA TCTACCGGAAGCCAGACATCCCTCTGCTCGGCTTGGGTTCATCTGCACCTACTGTGACCA TTGCCACCCACGGCCAGCTGCTGGGCACGTCCCAGGCCATCCAGCTGGGCGCTTCGTGGA AGCAAGTGGACCAGTTCCTGGGAGTTCCGTATGCCGCCCCTCCGCTGGCAGAGAGCCGCT TCCGGGCCCCGGAGCCCTTGAACTGGACAGGGACCTGGGATGCCACCAAGCCACGGGCCA GCTGCTGGCAGCCAGGCATCAGACCGGCCACAGCTCCTGGGGTCAGCGAAGACTGTCTCT ATCTCAGCGTGTTTGTCCCTCAGAGCCTGACCCCCAACGCATCCGTGCTGGTGTTCTTCC ACAACGGCGCCGAGGGACCGCTGGCCATGGCCGTGGACGGCTCCTTCCTGGCTGCTGTTG GCAACCTCATTGTGGTCACTGCCAGCTACCGAACGGGCGTCTTTGGCTTCCTGAGTTCCG GATCCAGCGAGGTGAGTGGCAACTGGGGGCTGCTGGACCAGGTGGCGGCTCTGACCTGGG TGCAGACCCACATCGGAGTGTTTGGCGGGGACCCTCGGCGCGTGGCCCTGGCAGCAGACC GTGGCGGAGCCGACGTGGCTGGTATCCATCTTCTAACCAGCAGGGCCACCAACTCCAGAC TCTTCCGGAGAGCGGTGCTGATGGGCGGCTCCGTGCTCTCCCCCGCCGCCGTCATCAGGC CGGACAGGGCTCAGCAGCAGGCAGCAGCTTTGGCCAAGGAGGTTGGCTGCCCCACCTCGT CCATCCCAGAAATGGTGTCCTGCCTCCGCCAGGAGCCTGCCAGCCTCCTCAATGACGCCC AGAGCAAGCTCCTGGCCGTGAGTGGCCCTTTTCACTACTGGGGTCCTGTGGTCGACGGCC AGCTCCTGCGAGAGGCGCCAGCCAGGGCACTGCAGCGGCCTCCACGGGCAAAGCTGGACC TGCTCATCGGGAGCTCTCAGGACGATGGGCTCATCGACAGAGCCAAGGCCGTGAAGCGAT TTGAGGAAAGTCAAGGCCGGACCAGTAGCAAAACAGCCTTTTACCAGGCTCTGCAGAATT CTCTGGGCGGTGAAGCGGGGGACCCGGGAGTGCAGGCTGCGGCCACATGGTACTACTCCC TGGAGCACGATACCGACGACTACGCCTCCTTCTCCCGGGCCCTGGAGGCGGCCACCCGGG ACTACTTTATCATCTGCCCTGTCATCGACATGGCCAGCCACTGGGCGAGGACGGCCCGGG GAAACGTCTTCATGTACCACGCTCCCGAAAGCTACAGCCACGGCAGCCTGGAACTGCTGG CCGATGTCCGCTATGCCTTTGGGCTCCCCTTCTACCCCGCCTACGAGGGGCAGTTTACCC AGGAGGAGAAAAGCCTCTCCCTGAAAATCATGCAGTACTTTTCCAACTTCGTCCGATCTG GAAATCCCAACTACCCTCATGAGTTCTCCAGGAAAGCACCTGAATTTGCAGCCCCCTGGC CCGACTTTGTCCCGGGAGACGGGGCAGAGAGCTACAAGGAGCTCAGTGTCCTGCTCCCCA ATCGACAGGGCCTGAAAAAGGCCGACTGCTCCTTCTGGTCCAAGTACATCTCGTCTCTGA AGGCCTCGGCAGATGAAGCTGAGGACGAGCCCTTAGCAGAGAGTGAAGAAGAGGACCGGC CTGGGCTGACAGAAGACCTCCTGGGGCTCCCGGAGTTAGCTTCCAAGAGCTACAGCAAGT GATAGCCCCTGGGGAGCCCCCCCCCTGCCAGCTGCCCCCTGGGCGGCTTATTCTCCTACA CAGACACTCACTTTCAATAAAGGCTCTACCTGCAGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 650-753, + strand, RNAz p=0.82534 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 650-753, + strand, RNAz p=0.82534 |
| Aligned organism(s): 46 entry(ies) | More info |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
| 72-296, gnl|bosTau2|chr14 (4586217-4586441) | |
| 72-296, gnl|Hg17|chr8 (134099181-134099425) | |
| 72-296, gnl|Mm7|chr15 (66847940-66848167) | |
| 540-759, gnl|bosTau2|chr14 (4597465-4597684) | |
| 540-759, gnl|canFam2|chr13 (32531938-32532177) | |
| 540-759, gnl|danRer3|chrNA (59676843-59676634) | |
| 540-759, gnl|echTel1|scaffold_321037 (38601-38824) | |
| 540-759, gnl|hg17|chr8 (134111240-134111482) | |
| 540-759, gnl|Hg17|chr8 (134111247-134111468) | |
| 540-759, gnl|loxAfr1|scaffold_47681 (3247-3008) | |
| 540-759, gnl|mm7|chr15 (66856950-66857190) | |
| 540-759, gnl|Mm7|chr15 (66856957-66857176) | |
| 540-759, gnl|monDom2|scaffold_3 (17281227-17280993) | |
| 540-759, gnl|oryCun1|scaffold_200012 (2574-2334) | |
| 540-759, gnl|panTro1|chr7_random (10164141-10164383) | |
| 540-759, gnl|rheMac2|chr8 (135593637-135593879) | |
| 540-759, gnl|rn3|chr7 (104174170-104174410) | |
| 540-759, gnl|tetNig1|chrUn_random (46815222-46815405) | |
| 1074-1259, gnl|bosTau2|chr14 (4676100-4676285) | |
| 1074-1259, gnl|canFam2|chr13 (32614474-32614685) | |
| 1074-1259, gnl|dasNov1|scaffold_47919 (7798-7607) | |
| 1074-1259, gnl|galGal2|chr2 (141925403-141925205) | |
| 1074-1259, gnl|hg17|chr8 (134194834-134195035) | |
| 1074-1259, gnl|Hg17|chr8 (134194845-134195030) | |
| 1074-1259, gnl|loxAfr1|scaffold_87859 (29718-29521) | |
| 1074-1259, gnl|mm7|chr15 (66921556-66921808) | |
| 1074-1259, gnl|Mm7|chr15 (66921618-66921803) | |
| 1074-1259, gnl|monDom2|scaffold_3 (17164983-17164771) | |
| 1074-1259, gnl|oryCun1|scaffold_107665 (15373-15180) | |
| 1074-1259, gnl|panTro1|chr7 (137175437-137175641) | |
| 1074-1259, gnl|rheMac2|chr8 (135677723-135677926) | |
| 1074-1259, gnl|rn3|chr7 (104242758-104243047) | |
| 1074-1259, gnl|xenTro1|scaffold_976 (146703-146900) | |
| 1501-1695, gnl|bosTau2|chr14 (4700074-4700268) | |
| 1501-1695, gnl|canFam2|chr13 (32633034-32633280) | |
| 1501-1695, gnl|echTel1|scaffold_279667 (43064-42817) | |
| 1501-1695, gnl|hg17|chr8 (134214868-134215117) | |
| 1501-1695, gnl|Hg17|chr8 (134214895-134215111) | |
| 1501-1695, gnl|loxAfr1|scaffold_14015 (26492-26241) | |
| 1501-1695, gnl|mm7|chr15 (66933095-66933338) | |
| 1501-1695, gnl|Mm7|chr15 (66933119-66933310) | |
| 1501-1695, gnl|monDom2|scaffold_3 (17123794-17123561) | |
| 1501-1695, gnl|oryCun1|scaffold_107665 (441-192) | |
| 1501-1695, gnl|panTro1|chr7 (137195497-137195746) | |
| 1501-1695, gnl|rheMac2|chr8 (135701037-135701286) | |
| 1501-1695, gnl|rn3|chr7 (104253856-104254097) |
| Aligned organism(s): 46 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 72-296, gnl|bosTau2|chr14 (4586217-4586441) | |
| 72-296, gnl|Hg17|chr8 (134099181-134099425) | |
| 72-296, gnl|Mm7|chr15 (66847940-66848167) | |
| 540-759, gnl|bosTau2|chr14 (4597465-4597684) | |
| 540-759, gnl|canFam2|chr13 (32531938-32532177) | |
| 540-759, gnl|danRer3|chrNA (59676843-59676634) | |
| 540-759, gnl|echTel1|scaffold_321037 (38601-38824) | |
| 540-759, gnl|hg17|chr8 (134111240-134111482) | |
| 540-759, gnl|Hg17|chr8 (134111247-134111468) | |
| 540-759, gnl|loxAfr1|scaffold_47681 (3247-3008) | |
| 540-759, gnl|mm7|chr15 (66856950-66857190) | |
| 540-759, gnl|Mm7|chr15 (66856957-66857176) | |
| 540-759, gnl|monDom2|scaffold_3 (17281227-17280993) | |
| 540-759, gnl|oryCun1|scaffold_200012 (2574-2334) | |
| 540-759, gnl|panTro1|chr7_random (10164141-10164383) | |
| 540-759, gnl|rheMac2|chr8 (135593637-135593879) | |
| 540-759, gnl|rn3|chr7 (104174170-104174410) | |
| 540-759, gnl|tetNig1|chrUn_random (46815222-46815405) | |
| 1074-1259, gnl|bosTau2|chr14 (4676100-4676285) | |
| 1074-1259, gnl|canFam2|chr13 (32614474-32614685) | |
| 1074-1259, gnl|dasNov1|scaffold_47919 (7798-7607) | |
| 1074-1259, gnl|galGal2|chr2 (141925403-141925205) | |
| 1074-1259, gnl|hg17|chr8 (134194834-134195035) | |
| 1074-1259, gnl|Hg17|chr8 (134194845-134195030) | |
| 1074-1259, gnl|loxAfr1|scaffold_87859 (29718-29521) | |
| 1074-1259, gnl|mm7|chr15 (66921556-66921808) | |
| 1074-1259, gnl|Mm7|chr15 (66921618-66921803) | |
| 1074-1259, gnl|monDom2|scaffold_3 (17164983-17164771) | |
| 1074-1259, gnl|oryCun1|scaffold_107665 (15373-15180) | |
| 1074-1259, gnl|panTro1|chr7 (137175437-137175641) | |
| 1074-1259, gnl|rheMac2|chr8 (135677723-135677926) | |
| 1074-1259, gnl|rn3|chr7 (104242758-104243047) | |
| 1074-1259, gnl|xenTro1|scaffold_976 (146703-146900) | |
| 1501-1695, gnl|bosTau2|chr14 (4700074-4700268) | |
| 1501-1695, gnl|canFam2|chr13 (32633034-32633280) | |
| 1501-1695, gnl|echTel1|scaffold_279667 (43064-42817) | |
| 1501-1695, gnl|hg17|chr8 (134214868-134215117) | |
| 1501-1695, gnl|Hg17|chr8 (134214895-134215111) | |
| 1501-1695, gnl|loxAfr1|scaffold_14015 (26492-26241) | |
| 1501-1695, gnl|mm7|chr15 (66933095-66933338) | |
| 1501-1695, gnl|Mm7|chr15 (66933119-66933310) | |
| 1501-1695, gnl|monDom2|scaffold_3 (17123794-17123561) | |
| 1501-1695, gnl|oryCun1|scaffold_107665 (441-192) | |
| 1501-1695, gnl|panTro1|chr7 (137195497-137195746) | |
| 1501-1695, gnl|rheMac2|chr8 (135701037-135701286) | |
| 1501-1695, gnl|rn3|chr7 (104253856-104254097) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (8.22231) |