Ss1.1-rpigcb_14367.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTCCCTAGCGATCCTCACGCCCTCCAACCCGAGACTTTCAGAGATTTGTAACCGCTTTG TCCTGATACGTGTTAAACCTCTTTAGAAGATGGCCGATCCTTGGCAGGAATGCATGGATT ATGCAGTTACCCTGGCGAGACAAGCTGGAGAGATTGTTCGTGAAGCTCTAAAAAATGAAA TGAATATTATGATTAAAAGTTCTCCAGCGGATTTGGTAACTGCTACCGACGAGAAAGTTG AAAAAATGCTTATTTCTTCCATAAAGGAAAAGTATCCGTCTCACAGTTTCATTGGTGAGG AATCTGTGGCAGCTGGGGAAAAAAGTGTCTTAACTGACAACCCAACGTGGATCATAGACC CTATTGATGGAACGACTAACTTTGTACATGGATTTCCTTTTGTGGCTGTTTCAATTGGCT TTGTTGTAAATAAAGAGATGGAGTTTGGAGTTGTATACAGTTGCATGGAAGATAAGATGT ACACTGGCCGGAAAGGAAGAGGTGCCTTTTGTGATGGTCAAAAACTGCAGGTTTCACCTC AAAAAGATGTTACCAACTCACTCTTGGTGACAGAGTTAGGCTCTTCCAGAACACCGGAGA CTGTAAGAATTATTCTTTCTAATATGGAAAGGCTCCTTTGCATTCCCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTCCCTAGCGATCCTCACGCCCTCCAACCCGAGACTTTCAGAGATTTGTAACCGCTTTG TCCTGATACGTGTTAAACCTCTTTAGAAGATGGCCGATCCTTGGCAGGAATGCATGGATT ATGCAGTTACCCTGGCGAGACAAGCTGGAGAGATTGTTCGTGAAGCTCTAAAAAATGAAA TGAATATTATGATTAAAAGTTCTCCAGCGGATTTGGTAACTGCTACCGACGAGAAAGTTG AAAAAATGCTTATTTCTTCCATAAAGGAAAAGTATCCGTCTCACAGTTTCATTGGTGAGG AATCTGTGGCAGCTGGGGAAAAAAGTGTCTTAACTGACAACCCAACGTGGATCATAGACC CTATTGATGGAACGACTAACTTTGTACATGGATTTCCTTTTGTGGCTGTTTCAATTGGCT TTGTTGTAAATAAAGAGATGGAGTTTGGAGTTGTATACAGTTGCATGGAAGATAAGATGT ACACTGGCCGGAAAGGAAGAGGTGCCTTTTGTGATGGTCAAAAACTGCAGGTTTCACCTC AAAAAGATGTTACCAACTCACTCTTGGTGACAGAGTTAGGCTCTTCCAGAACACCGGAGA CTGTAAGAATTATTCTTTCTAATATGGAAAGGCTCCTTTGCATTCCCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 151-286, gnl|bosTau2|chr14 (49831780-49831645) | |
| 151-286, gnl|canFam2|chr29 (31797764-31797908) | |
| 151-286, gnl|danRer3|chr2 (18143020-18142883) | |
| 151-286, gnl|echTel1|scaffold_279848 (345-201) | |
| 151-286, gnl|hg17|chr8 (82700843-82700988) | |
| 151-286, gnl|Hg17|chr8 (82755575-82755440) | |
| 151-286, gnl|loxAfr1|scaffold_88474 (275-419) | |
| 151-286, gnl|mm7|chr3 (10336521-10336666) | |
| 151-286, gnl|Mm7|chr3 (10336665-10336530) | |
| 151-286, gnl|monDom2|scaffold_4 (75607211-75607070) | |
| 151-286, gnl|oryCun1|scaffold_178860 (10383-10527) | |
| 151-286, gnl|panTro1|chr7_random (37645743-37645888) | |
| 151-286, gnl|rheMac2|chr8 (84064699-84064843) | |
| 151-286, gnl|rn3|chr2 (93363985-93363841) | |
| 151-286, gnl|tetNig1|chr6 (5370166-5370303) | |
| 151-286, gnl|xenTro1|scaffold_205 (1342769-1342907) | |
| 436-567, gnl|bosTau2|chr14 (49826364-49826230) | |
| 436-567, gnl|canFam2|chr29 (31791618-31791797) | |
| 436-567, gnl|danRer3|chr2 (18144441-18144281) | |
| 436-567, gnl|dasNov1|scaffold_103104 (2520-2341) | |
| 436-567, gnl|echTel1|scaffold_279848 (8274-8096) | |
| 436-567, gnl|fr1|chrUn (100765704-100765528) | |
| 436-567, gnl|hg17|chr8 (82694753-82694930) | |
| 436-567, gnl|Hg17|chr8 (82748741-82748608) | |
| 436-567, gnl|loxAfr1|scaffold_138181 (30088-30264) | |
| 436-567, gnl|mm7|chr3 (10331063-10331221) | |
| 436-567, gnl|Mm7|chr3 (10331199-10331071) | |
| 436-567, gnl|monDom2|scaffold_4 (75620470-75620287) | |
| 436-567, gnl|oryCun1|scaffold_178860 (5510-5687) | |
| 436-567, gnl|panTro1|chr7_random (37639636-37639813) | |
| 436-567, gnl|rheMac2|chr8 (84058325-84058505) | |
| 436-567, gnl|rn3|chr2 (93369512-93369328) | |
| 436-567, gnl|tetNig1|chr6 (5365090-5365217) | |
| 436-567, gnl|xenTro1|scaffold_205 (1340099-1340271) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 151-286, gnl|bosTau2|chr14 (49831780-49831645) | |
| 151-286, gnl|canFam2|chr29 (31797764-31797908) | |
| 151-286, gnl|danRer3|chr2 (18143020-18142883) | |
| 151-286, gnl|echTel1|scaffold_279848 (345-201) | |
| 151-286, gnl|hg17|chr8 (82700843-82700988) | |
| 151-286, gnl|Hg17|chr8 (82755575-82755440) | |
| 151-286, gnl|loxAfr1|scaffold_88474 (275-419) | |
| 151-286, gnl|mm7|chr3 (10336521-10336666) | |
| 151-286, gnl|Mm7|chr3 (10336665-10336530) | |
| 151-286, gnl|monDom2|scaffold_4 (75607211-75607070) | |
| 151-286, gnl|oryCun1|scaffold_178860 (10383-10527) | |
| 151-286, gnl|panTro1|chr7_random (37645743-37645888) | |
| 151-286, gnl|rheMac2|chr8 (84064699-84064843) | |
| 151-286, gnl|rn3|chr2 (93363985-93363841) | |
| 151-286, gnl|tetNig1|chr6 (5370166-5370303) | |
| 151-286, gnl|xenTro1|scaffold_205 (1342769-1342907) | |
| 436-567, gnl|bosTau2|chr14 (49826364-49826230) | |
| 436-567, gnl|canFam2|chr29 (31791618-31791797) | |
| 436-567, gnl|danRer3|chr2 (18144441-18144281) | |
| 436-567, gnl|dasNov1|scaffold_103104 (2520-2341) | |
| 436-567, gnl|echTel1|scaffold_279848 (8274-8096) | |
| 436-567, gnl|fr1|chrUn (100765704-100765528) | |
| 436-567, gnl|hg17|chr8 (82694753-82694930) | |
| 436-567, gnl|Hg17|chr8 (82748741-82748608) | |
| 436-567, gnl|loxAfr1|scaffold_138181 (30088-30264) | |
| 436-567, gnl|mm7|chr3 (10331063-10331221) | |
| 436-567, gnl|Mm7|chr3 (10331199-10331071) | |
| 436-567, gnl|monDom2|scaffold_4 (75620470-75620287) | |
| 436-567, gnl|oryCun1|scaffold_178860 (5510-5687) | |
| 436-567, gnl|panTro1|chr7_random (37639636-37639813) | |
| 436-567, gnl|rheMac2|chr8 (84058325-84058505) | |
| 436-567, gnl|rn3|chr2 (93369512-93369328) | |
| 436-567, gnl|tetNig1|chr6 (5365090-5365217) | |
| 436-567, gnl|xenTro1|scaffold_205 (1340099-1340271) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.229595) | |
| cty (0.20816) | |
| pla (0.133672) |