Non-Coding RNA Search

Ss1.1-rpigcb_14443.5

Sequence:


               
               TTTTTTTTTTTTTTTTAAATCACTCCCTCTTAGAGCCCCTCTTCCCTTATTGCAGCAGCC
TACTGATAACTTCGTAACTGTGGCTAGTAAAGTAGAAGCTACAATAATGATAAGGGCAGA
AATTGTACTTAAAGTACAGGTCTTTTTTGTTCTGACAGTATAAGATGTCTGAAAAAAACA
GAACCCAAAATGCTGTGGCGAAATGTAAAGGCTTCATTTCAGACTGTAGATGGCTTGTAC
TACTATAATAATTGTTTTCAAATGTGTTTACTAACTGTAGTGTCGACTGCCTGACCAAAT
TCCAGTGACATTTTACACCAAAATATTCCTTCTCAGTCCTATTTGCTAGCAACATTTGCA
CTGTGATTGGCTGGCTATAACCACCCCATGGTTAAACCATTTTCATAATTAGTACTGCCA
GCAATAGTGACAAACACTGTAACTTTTCTGCATAAAAAGCATTAATTGTACACCTACCAT
CCACACAAATACAGTTTTTCAAACTTAACATGAGGTAAAATTAATTTCCTATAGTGTGGC
GAGTTTATTGAGAAATTGTGTTTCATAAATGGATTTCCCTACTATGACTGTGAAAACATA
TCAAGTGCCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTAAATCACTCCCTCTTAGAGCCCCTCTTCCCTTATTGCAGCAGCC
TACTGATAACTTCGTAACTGTGGCTAGTAAAGTAGAAGCTACAATAATGATAAGGGCAGA
AATTGTACTTAAAGTACAGGTCTTTTTTGTTCTGACAGTATAAGATGTCTGAAAAAAACA
GAACCCAAAATGCTGTGGCGAAATGTAAAGGCTTCATTTCAGACTGTAGATGGCTTGTAC
TACTATAATAATTGTTTTCAAATGTGTTTACTAACTGTAGTGTCGACTGCCTGACCAAAT
TCCAGTGACATTTTACACCAAAATATTCCTTCTCAGTCCTATTTGCTAGCAACATTTGCA
CTGTGATTGGCTGGCTATAACCACCCCATGGTTAAACCATTTTCATAATTAGTACTGCCA
GCAATAGTGACAAACACTGTAACTTTTCTGCATAAAAAGCATTAATTGTACACCTACCAT
CCACACAAATACAGTTTTTCAAACTTAACATGAGGTAAAATTAATTTCCTATAGTGTGGC
GAGTTTATTGAGAAATTGTGTTTCATAAATGGATTTCCCTACTATGACTGTGAAAACATA
TCAAGTGCCACT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-612, gnl|bosTau2|chr19 (5141001-5141589)
               

               
               17-612, gnl|Hg17|chr17 (55380811-55381406)
               

               
               17-612, gnl|Mm7|chr11 (86570709-86570056)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-612, gnl|bosTau2|chr19 (5141001-5141589)
               

               
               17-612, gnl|Hg17|chr17 (55380811-55381406)
               

               
               17-612, gnl|Mm7|chr11 (86570709-86570056)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hyp (0.142837)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cty (0.10408)

	17-612, gnl\|bosTau2\|chr19 (5141001-5141589)
	17-612, gnl\|Hg17\|chr17 (55380811-55381406)
	17-612, gnl\|Mm7\|chr11 (86570709-86570056)