Non-Coding RNA Search

Ss1.1-rpigcb_14630.5

Sequence:


               
               GTGAACAGTATTTTGAGTAGCAAGGGCCTGGGGACCCCAAAGTCTACAGGTAAGAGGTCC
CTCGTGTCACCCACTCAAGCACGACAGCAAATTCAGCCTGCGATGCCTGTTCTCACAGCC
ATCTGCTCTGTGGGCTGGTTTGCAGGGGAACAGACTTCCTGCGCCCCTTCTCTGCCTGCC
TAGGCCTGGGACCGAGCATGAAGGAAAGGCTGCTTGCTCCCAAGGACCCATGGAAACAGC
CAGAACAGGTGCGAGAGGCTTCTAGTGCTTCCAGAAACATGTGTTCAGGGACACACTGTT
CCCGGGTCACCTGGTCACCTGGGGCTTGTTAAACATACAGATGGCTGGGCCCTAGCCCAG
CCTACCTGCGTCAGAACTGGCCAAGGTGGGGCCCCGGGAGTCTGTATTTTTAAAAAGTGT
GCCAGCTGACTCTGATTCACAGCCAGCCTGGTGGAGGGGAAGCCGAGAGAAAGAGCTGGC
AGCACGTGGAAGTTAACTGCTCAGCAGGACTGGTGTAAGGTTGTAGACTCATGTGCTGCC
TGGTGGCACCCGGAGGAGGGAGGGGCCACCAGGCAGAGGGAGGGGCGGAAACCTTGACCG
CTCTGCTTGCCACGTTCTGCACCCTGCAGGGCTGCATCTGCCTGGAAGGACGGGCATCTT
TTTCTTAATAATAATCGTTAACATTTGGTGCTTTCTATGAGCCAAGCAGTATTTAACTTT
TAGTCCCCCTAACAGCTCCAAGAGATGGCCTTACCACGACCCTGATTTTACTCCTGGGAA
AGTGAGGCACAGAGATATCAATGACTTGCCCCGGGTCACACCCCCAGTAAGTGGTGGAGT
CAGGATTTGAATCTAGGACATCTAGTTCCCGAGTCCTTGCACTTAAAGTCATGTTCTCTG
ACTTTGGGCAAAAGTGCTGTTGCACTTCAAAGACCGTCCTTGCCCTGANCAAGTGCCTTT
CTCTAGCTCTTCCCCAGGTGGAGGGAAGGCTAGCAGTGACCTTGGCTGGCTCTGGAATCA
CACCCGAGTTTGATCCCTGCCTCTACTACTTACTGTAACTTTGAGAAGTTATTTGCTGAC
TTCAGTGAGCCTCGATTTTCCCCACGTGTCAAATAGGAATAATAATAGTATGAGATGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAACAGTATTTTGAGTAGCAAGGGCCTGGGGACCCCAAAGTCTACAGGTAAGAGGTCC
CTCGTGTCACCCACTCAAGCACGACAGCAAATTCAGCCTGCGATGCCTGTTCTCACAGCC
ATCTGCTCTGTGGGCTGGTTTGCAGGGGAACAGACTTCCTGCGCCCCTTCTCTGCCTGCC
TAGGCCTGGGACCGAGCATGAAGGAAAGGCTGCTTGCTCCCAAGGACCCATGGAAACAGC
CAGAACAGGTGCGAGAGGCTTCTAGTGCTTCCAGAAACATGTGTTCAGGGACACACTGTT
CCCGGGTCACCTGGTCACCTGGGGCTTGTTAAACATACAGATGGCTGGGCCCTAGCCCAG
CCTACCTGCGTCAGAACTGGCCAAGGTGGGGCCCCGGGAGTCTGTATTTTTAAAAAGTGT
GCCAGCTGACTCTGATTCACAGCCAGCCTGGTGGAGGGGAAGCCGAGAGAAAGAGCTGGC
AGCACGTGGAAGTTAACTGCTCAGCAGGACTGGTGTAAGGTTGTAGACTCATGTGCTGCC
TGGTGGCACCCGGAGGAGGGAGGGGCCACCAGGCAGAGGGAGGGGCGGAAACCTTGACCG
CTCTGCTTGCCACGTTCTGCACCCTGCAGGGCTGCATCTGCCTGGAAGGACGGGCATCTT
TTTCTTAATAATAATCGTTAACATTTGGTGCTTTCTATGAGCCAAGCAGTATTTAACTTT
TAGTCCCCCTAACAGCTCCAAGAGATGGCCTTACCACGACCCTGATTTTACTCCTGGGAA
AGTGAGGCACAGAGATATCAATGACTTGCCCCGGGTCACACCCCCAGTAAGTGGTGGAGT
CAGGATTTGAATCTAGGACATCTAGTTCCCGAGTCCTTGCACTTAAAGTCATGTTCTCTG
ACTTTGGGCAAAAGTGCTGTTGCACTTCAAAGACCGTCCTTGCCCTGANCAAGTGCCTTT
CTCTAGCTCTTCCCCAGGTGGAGGGAAGGCTAGCAGTGACCTTGGCTGGCTCTGGAATCA
CACCCGAGTTTGATCCCTGCCTCTACTACTTACTGTAACTTTGAGAAGTTATTTGCTGAC
TTCAGTGAGCCTCGATTTTCCCCACGTGTCAAATAGGAATAATAATAGTATGAGATGGGA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               93-210, - strand, RNAz p=0.819133
               

               
               323-433, + strand, RNAz p=0.991903
               

               
               851-1000, - strand, RNAz p=0.997669

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               93-210, - strand, RNAz p=0.819133
               

               
               323-433, + strand, RNAz p=0.991903
               

               
               851-1000, - strand, RNAz p=0.997669

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               29-568, gnl|bosTau2|chr20 (23077243-23077773)
               

               
               29-568, gnl|Hg17|chr20 (36875069-36875639)
               

               
               29-568, gnl|Mm7|chr2 (158414509-158415027)
               


               
               657-1137, gnl|bosTau2|chr20 (23078142-23078627)
               

               
               657-1137, gnl|Hg17|chr20 (36876152-36876566)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               29-568, gnl|bosTau2|chr20 (23077243-23077773)
               

               
               29-568, gnl|Hg17|chr20 (36875069-36875639)
               

               
               29-568, gnl|Mm7|chr2 (158414509-158415027)
               


               
               657-1137, gnl|bosTau2|chr20 (23078142-23078627)
               

               
               657-1137, gnl|Hg17|chr20 (36876152-36876566)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	93-210, - strand, RNAz p=0.819133
	323-433, + strand, RNAz p=0.991903
	851-1000, - strand, RNAz p=0.997669

	29-568, gnl\|bosTau2\|chr20 (23077243-23077773)
	29-568, gnl\|Hg17\|chr20 (36875069-36875639)
	29-568, gnl\|Mm7\|chr2 (158414509-158415027)

	657-1137, gnl\|bosTau2\|chr20 (23078142-23078627)
	657-1137, gnl\|Hg17\|chr20 (36876152-36876566)