Non-Coding RNA Search

Ss1.1-rpigcb_14929.5

Sequence:


               
               GCCGCCTGCTCCTCTACGCCTCGCAAATCTGCAAGGGCATGGAGTACCTGGGCTCCCGCC
GCTGCGTGCACCGCGACCTGGCAGCCCGTAACATCCTGGTGGAGAGCGAAACGCACGTCA
AGATCGCCGACTTCGGCCTCGCGAAGCTGCTGCCGCTAGACAAAGACTACTATGTGGTCC
GCGAGCCCGGCCAGAGCCCCATCTTCTGGTATGCCCCGGAGTCCCTCTCAGACAATATCT
TCTCGCGCCAGTCGGATGTCTGGAGCTTCGGGGTCGTGCTGTATGAGCTCTTCACCTACA
GCGACAAGAGCTGTAGCCCCTCAGCCGAGTTCCTGCGGATGATGGGATGTGAGCGAGATG
TCCCAGCCCTCTGTCGTCTCCTGGAGCTGCTGGCCGAAGGCCAGAGGCTGCCCGCACCTC
CTGCCTGTCCTAGTGAGGTTCATGAGCTCATGAAGCTGTGCTGGGCCCCTAGCCCTCAAG
ATCGGCCATCATTCAGCACCCTGGGCCCTCAGCTGGATGCACTGTGGAGTGGAGGCCGGG
GATAGTGTCCAGAGCATGGAACTCTCAGCTTCCCTGCTTGTCCTATTCACTGTCATTTTT
ATATCTCCTACACACACACACCTCTGGGTTCTGGTCTCCATGGACTGGCTATGTGCCCTT
GAGCAGGGAGCCACCTTCTCTGGGCTTTCTGCTTCACAGAGATCCCCTCATGGGGCAAGT
GACATTGCACTTGGAGGGCAACCCTTGCTTGTAGAGCAACAGCGGCGTGGCCTTTGGAAC
CCATAAAGATTCAAGACAGATACAATACTAGGGTCTACTGAGCCTCGCGCCCCAGATTCT
AGGGACCAAACTTAAGCCACGCCCCTCTTCTCATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCTGCTCCTCTACGCCTCGCAAATCTGCAAGGGCATGGAGTACCTGGGCTCCCGCC
GCTGCGTGCACCGCGACCTGGCAGCCCGTAACATCCTGGTGGAGAGCGAAACGCACGTCA
AGATCGCCGACTTCGGCCTCGCGAAGCTGCTGCCGCTAGACAAAGACTACTATGTGGTCC
GCGAGCCCGGCCAGAGCCCCATCTTCTGGTATGCCCCGGAGTCCCTCTCAGACAATATCT
TCTCGCGCCAGTCGGATGTCTGGAGCTTCGGGGTCGTGCTGTATGAGCTCTTCACCTACA
GCGACAAGAGCTGTAGCCCCTCAGCCGAGTTCCTGCGGATGATGGGATGTGAGCGAGATG
TCCCAGCCCTCTGTCGTCTCCTGGAGCTGCTGGCCGAAGGCCAGAGGCTGCCCGCACCTC
CTGCCTGTCCTAGTGAGGTTCATGAGCTCATGAAGCTGTGCTGGGCCCCTAGCCCTCAAG
ATCGGCCATCATTCAGCACCCTGGGCCCTCAGCTGGATGCACTGTGGAGTGGAGGCCGGG
GATAGTGTCCAGAGCATGGAACTCTCAGCTTCCCTGCTTGTCCTATTCACTGTCATTTTT
ATATCTCCTACACACACACACCTCTGGGTTCTGGTCTCCATGGACTGGCTATGTGCCCTT
GAGCAGGGAGCCACCTTCTCTGGGCTTTCTGCTTCACAGAGATCCCCTCATGGGGCAAGT
GACATTGCACTTGGAGGGCAACCCTTGCTTGTAGAGCAACAGCGGCGTGGCCTTTGGAAC
CCATAAAGATTCAAGACAGATACAATACTAGGGTCTACTGAGCCTCGCGCCCCAGATTCT
AGGGACCAAACTTAAGCCACGCCCCTCTTCTCATTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61826289|ref|XP_583563.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61826289|ref|XP_583563.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               660-766, + strand, RNAz p=0.998053

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               660-766, + strand, RNAz p=0.998053

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000215, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000215, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               34-211, gnl|bosTau2|chr7 (4575217-4575394)
               

               
               34-211, gnl|canFam2|chr20 (48065959-48065820)
               

               
               34-211, gnl|danRer3|chr8 (6089007-6088874)
               

               
               34-211, gnl|dasNov1|scaffold_58623 (41210-41346)
               

               
               34-211, gnl|echTel1|scaffold_306709 (5653-5518)
               

               
               34-211, gnl|fr1|chrUn (257621310-257621171)
               

               
               34-211, gnl|hg17|chr19 (17803029-17803168)
               

               
               34-211, gnl|Hg17|chr19 (17803211-17803033)
               

               
               34-211, gnl|loxAfr1|scaffold_9200 (29857-29722)
               

               
               34-211, gnl|mm7|chr8 (70153679-70153540)
               

               
               34-211, gnl|Mm7|chr8 (70153495-70153672)
               

               
               34-211, gnl|monDom2|scaffold_106 (2042668-2042800)
               

               
               34-211, gnl|oryCun1|scaffold_206796 (115597-115729)
               

               
               34-211, gnl|panTro1|chr20 (18795300-18795439)
               

               
               34-211, gnl|rheMac2|chr19 (17398230-17398369)
               

               
               34-211, gnl|rn3|chr16 (18886691-18886552)
               

               
               34-211, gnl|tetNig1|chr1 (14550901-14550762)
               

               
               34-211, gnl|xenTro1|scaffold_1217 (225424-225563)
               


               
               436-873, gnl|bosTau2|chr7 (4577286-4577744)
               

               
               436-873, gnl|Hg17|chr19 (17798721-17798271)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-211, gnl|bosTau2|chr7 (4575217-4575394)
               

               
               34-211, gnl|canFam2|chr20 (48065959-48065820)
               

               
               34-211, gnl|danRer3|chr8 (6089007-6088874)
               

               
               34-211, gnl|dasNov1|scaffold_58623 (41210-41346)
               

               
               34-211, gnl|echTel1|scaffold_306709 (5653-5518)
               

               
               34-211, gnl|fr1|chrUn (257621310-257621171)
               

               
               34-211, gnl|hg17|chr19 (17803029-17803168)
               

               
               34-211, gnl|Hg17|chr19 (17803211-17803033)
               

               
               34-211, gnl|loxAfr1|scaffold_9200 (29857-29722)
               

               
               34-211, gnl|mm7|chr8 (70153679-70153540)
               

               
               34-211, gnl|Mm7|chr8 (70153495-70153672)
               

               
               34-211, gnl|monDom2|scaffold_106 (2042668-2042800)
               

               
               34-211, gnl|oryCun1|scaffold_206796 (115597-115729)
               

               
               34-211, gnl|panTro1|chr20 (18795300-18795439)
               

               
               34-211, gnl|rheMac2|chr19 (17398230-17398369)
               

               
               34-211, gnl|rn3|chr16 (18886691-18886552)
               

               
               34-211, gnl|tetNig1|chr1 (14550901-14550762)
               

               
               34-211, gnl|xenTro1|scaffold_1217 (225424-225563)
               


               
               436-873, gnl|bosTau2|chr7 (4577286-4577744)
               

               
               436-873, gnl|Hg17|chr19 (17798721-17798271)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lnt (0.142308)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               cty (0.10408)

	34-211, gnl\|bosTau2\|chr7 (4575217-4575394)
	34-211, gnl\|canFam2\|chr20 (48065959-48065820)
	34-211, gnl\|danRer3\|chr8 (6089007-6088874)
	34-211, gnl\|dasNov1\|scaffold_58623 (41210-41346)
	34-211, gnl\|echTel1\|scaffold_306709 (5653-5518)
	34-211, gnl\|fr1\|chrUn (257621310-257621171)
	34-211, gnl\|hg17\|chr19 (17803029-17803168)
	34-211, gnl\|Hg17\|chr19 (17803211-17803033)
	34-211, gnl\|loxAfr1\|scaffold_9200 (29857-29722)
	34-211, gnl\|mm7\|chr8 (70153679-70153540)
	34-211, gnl\|Mm7\|chr8 (70153495-70153672)
	34-211, gnl\|monDom2\|scaffold_106 (2042668-2042800)
	34-211, gnl\|oryCun1\|scaffold_206796 (115597-115729)
	34-211, gnl\|panTro1\|chr20 (18795300-18795439)
	34-211, gnl\|rheMac2\|chr19 (17398230-17398369)
	34-211, gnl\|rn3\|chr16 (18886691-18886552)
	34-211, gnl\|tetNig1\|chr1 (14550901-14550762)
	34-211, gnl\|xenTro1\|scaffold_1217 (225424-225563)

	436-873, gnl\|bosTau2\|chr7 (4577286-4577744)
	436-873, gnl\|Hg17\|chr19 (17798721-17798271)