Non-Coding RNA Search

Ss1.1-rpigcb_14974.5

Sequence:


               
               GGAGGAGCAACTGAAGCTGAGTGGGGAACAGTCGGAGGAGCCCTCAGCTTCCACTCCCCG
ACCCAGGTCATCTCCTGAAGAGACAATTGAGCCTGAAAGCCTTCACCAGCTCTTTGAGGG
TGAAAGCGAGACCGAGTCCTTCTATGGCTTTGAAGAAGCTGACCTAGATCTGATGGAGAT
TTGAGGGTTCGGGTCATGAGGGGGTGTGGAGTGGGGGTGGGGAAGCGTGAGGGAGGGGAA
AGGGATTTAGGGGAAAGGGGTATACCAGGTGGGGGTATTTGGTTTATATTTTTTAATTTT
AATGCCACCACTCCCCCCTGATGTTGACTTTTTCACATCCCTGTGGATTTGTGGATTATT
AGAAAAACCAATAGTGATCACGTCTGAGCCGATGAGCTGGCCTGTTGGTCATTCACTTCT
GCTAAAAACAAATTTTTGTGACTTTTTTTTAAATTGAAATCACTGTGTTTGGTATTTTTC
TGACAAAATCAAGAAAAAAGAAAAAAAAAATCCTTGGTGGGTGAATGTTAAGTTTTTTGT
TTCCCCTTATACCTCAATTGTATCATAGTACACCTGGGTTTTGTTTGTTTGTTTTACTGT
GTGGCCAATGTCTTTGGGCATGATGCTATCCAACCATTGTCCATGTGAGAACATTTCTAA
AGACGGGACAGACAAAAATTGTAGCTCACAAAGTGGTTTATTATATATATGGATAAAGTT
TTTTCATTGTGGTCTTAACACTTTTATATAAAATGAAAATGGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAGCAACTGAAGCTGAGTGGGGAACAGTCGGAGGAGCCCTCAGCTTCCACTCCCCG
ACCCAGGTCATCTCCTGAAGAGACAATTGAGCCTGAAAGCCTTCACCAGCTCTTTGAGGG
TGAAAGCGAGACCGAGTCCTTCTATGGCTTTGAAGAAGCTGACCTAGATCTGATGGAGAT
TTGAGGGTTCGGGTCATGAGGGGGTGTGGAGTGGGGGTGGGGAAGCGTGAGGGAGGGGAA
AGGGATTTAGGGGAAAGGGGTATACCAGGTGGGGGTATTTGGTTTATATTTTTTAATTTT
AATGCCACCACTCCCCCCTGATGTTGACTTTTTCACATCCCTGTGGATTTGTGGATTATT
AGAAAAACCAATAGTGATCACGTCTGAGCCGATGAGCTGGCCTGTTGGTCATTCACTTCT
GCTAAAAACAAATTTTTGTGACTTTTTTTTAAATTGAAATCACTGTGTTTGGTATTTTTC
TGACAAAATCAAGAAAAAAGAAAAAAAAAATCCTTGGTGGGTGAATGTTAAGTTTTTTGT
TTCCCCTTATACCTCAATTGTATCATAGTACACCTGGGTTTTGTTTGTTTGTTTTACTGT
GTGGCCAATGTCTTTGGGCATGATGCTATCCAACCATTGTCCATGTGAGAACATTTCTAA
AGACGGGACAGACAAAAATTGTAGCTCACAAAGTGGTTTATTATATATATGGATAAAGTT
TTTTCATTGTGGTCTTAACACTTTTATATAAAATGAAAATGGAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-120, - strand, RNAz p=0.764699
               

               
               241-358, - strand, RNAz p=0.61961

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, - strand, RNAz p=0.764699
               

               
               241-358, - strand, RNAz p=0.61961

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               270-383, + strand, RNAmicro p=0.974354

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               270-383, + strand, RNAmicro p=0.974354

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-767, gnl|bosTau2|chr3 (11674413-11675162)
               

               
               2-767, gnl|Hg17|chr1 (148190524-148189767)
               

               
               2-767, gnl|Mm7|chr3 (94754099-94754830)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-767, gnl|bosTau2|chr3 (11674413-11675162)
               

               
               2-767, gnl|Hg17|chr1 (148190524-148189767)
               

               
               2-767, gnl|Mm7|chr3 (94754099-94754830)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eru (0.240096)
               

               
               ece (0.229305)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.240096)
               

               
               ece (0.229305)
               

               
               cty (0.10408)

	2-120, - strand, RNAz p=0.764699
	241-358, - strand, RNAz p=0.61961

	2-767, gnl\|bosTau2\|chr3 (11674413-11675162)
	2-767, gnl\|Hg17\|chr1 (148190524-148189767)
	2-767, gnl\|Mm7\|chr3 (94754099-94754830)