Ss1.1-rpigcb_15094.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTGCATGGCAAAAGTGAGCTTACAGCTTGCCATTCAATTCCTTTTTCAAACTTATCTAC GGACAAAGAAAAAACTCAGGGTTGACACTGAAGAATGGATTGCCACTATTGAAGCTTTAC TTTCAAAAAGTTTTGATGCTTGTCAGTGGCTAGTTGAATATTTTATTAGTTCTGAAGGAC GAGAATTGATAAAGATTTTCTTACTGGAGTGCAATGTGAGAGAAGTCCGCATCGCTGTGG CCACCATTCTGGAGAAAACCCTAGACAGTGCCTTGTTTTATCAGGATAAGTTAAAGAGCC TTCACCAGTTGCTGGAGGTCCTTCTTGCTCTGTTGGATAAAGATGTCCCTGAAAATTGTA AAAACTGTGCTCAGTACTTTTTCCTGTTCAACACTTTTGTACAAAAGCAAGGAATTAGGG CCGGAGATCTTCTTCTGAGGCATTCAGCTCTGCGACACATGATTAGCTTCCTCCTGGGGG CCAATCGGCAAAACAATCAGATCCGCCGATGGAGTTCAGCTCAAGCACGAGAATTTGGGA ACCTTCACAACACAGTGGCATTACTTGTCTTGCATTCAGATGTGTCTTCCCAAAGGAACG TTGCTCCTGGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTGCATGGCAAAAGTGAGCTTACAGCTTGCCATTCAATTCCTTTTTCAAACTTATCTAC GGACAAAGAAAAAACTCAGGGTTGACACTGAAGAATGGATTGCCACTATTGAAGCTTTAC TTTCAAAAAGTTTTGATGCTTGTCAGTGGCTAGTTGAATATTTTATTAGTTCTGAAGGAC GAGAATTGATAAAGATTTTCTTACTGGAGTGCAATGTGAGAGAAGTCCGCATCGCTGTGG CCACCATTCTGGAGAAAACCCTAGACAGTGCCTTGTTTTATCAGGATAAGTTAAAGAGCC TTCACCAGTTGCTGGAGGTCCTTCTTGCTCTGTTGGATAAAGATGTCCCTGAAAATTGTA AAAACTGTGCTCAGTACTTTTTCCTGTTCAACACTTTTGTACAAAAGCAAGGAATTAGGG CCGGAGATCTTCTTCTGAGGCATTCAGCTCTGCGACACATGATTAGCTTCCTCCTGGGGG CCAATCGGCAAAACAATCAGATCCGCCGATGGAGTTCAGCTCAAGCACGAGAATTTGGGA ACCTTCACAACACAGTGGCATTACTTGTCTTGCATTCAGATGTGTCTTCCCAAAGGAACG TTGCTCCTGGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 78-194, + strand, RNAz p=0.695276 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 78-194, + strand, RNAz p=0.695276 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 78-194, gnl|bosTau2|chr3 (58746246-58746362) | |
| 78-194, gnl|canFam2|chr5 (57170176-57170043) | |
| 78-194, gnl|danRer3|chrUn (89437921-89438056) | |
| 78-194, gnl|dasNov1|scaffold_12579 (46925-46792) | |
| 78-194, gnl|echTel1|scaffold_321511 (151868-151735) | |
| 78-194, gnl|fr1|chrUn (57380671-57380547) | |
| 78-194, gnl|galGal2|chr8 (25531182-25531318) | |
| 78-194, gnl|hg17|chr1 (55267314-55267449) | |
| 78-194, gnl|Hg17|chr1 (55267436-55267320) | |
| 78-194, gnl|loxAfr1|scaffold_2981 (90971-90837) | |
| 78-194, gnl|mm7|chr4 (105792529-105792396) | |
| 78-194, gnl|Mm7|chr4 (105792405-105792521) | |
| 78-194, gnl|monDom2|scaffold_40 (20870156-20870019) | |
| 78-194, gnl|oryCun1|scaffold_200729 (84696-84562) | |
| 78-194, gnl|panTro1|chr1 (53589574-53589709) | |
| 78-194, gnl|rheMac2|chr1 (57939371-57939506) | |
| 78-194, gnl|rn3|chr5 (127480987-127480855) | |
| 78-194, gnl|tetNig1|chr1_random (2422702-2422834) | |
| 78-194, gnl|xenTro1|scaffold_1 (5339856-5339709) | |
| 289-407, gnl|bosTau2|chr3 (58753433-58753551) | |
| 289-407, gnl|canFam2|chr5 (57176780-57176675) | |
| 289-407, gnl|danRer3|chrUn (89433586-89433691) | |
| 289-407, gnl|dasNov1|scaffold_12579 (54172-54067) | |
| 289-407, gnl|echTel1|scaffold_321511 (156046-155941) | |
| 289-407, gnl|fr1|chrUn (57381274-57381184) | |
| 289-407, gnl|galGal2|chr8 (25528946-25529051) | |
| 289-407, gnl|hg17|chr1 (55261459-55261564) | |
| 289-407, gnl|Hg17|chr1 (55261584-55261466) | |
| 289-407, gnl|loxAfr1|scaffold_2981 (103027-102922) | |
| 289-407, gnl|mm7|chr4 (105796997-105796893) | |
| 289-407, gnl|Mm7|chr4 (105796871-105796989) | |
| 289-407, gnl|monDom2|scaffold_40 (20877721-20877616) | |
| 289-407, gnl|oryCun1|scaffold_200729 (87944-87839) | |
| 289-407, gnl|panTro1|chr1 (53583741-53583846) | |
| 289-407, gnl|rheMac2|chr1 (57933516-57933621) | |
| 289-407, gnl|rn3|chr5 (127486589-127486485) | |
| 289-407, gnl|tetNig1|chr1_random (2422091-2422191) | |
| 289-407, gnl|xenTro1|scaffold_1 (5343498-5343394) | |
| 493-603, gnl|bosTau2|chr3 (58755714-58755823) | |
| 493-603, gnl|canFam2|chr5 (57179141-57178988) | |
| 493-603, gnl|danRer3|chrUn (89428878-89428993) | |
| 493-603, gnl|dasNov1|scaffold_12579 (57036-56880) | |
| 493-603, gnl|echTel1|scaffold_321511 (158749-158593) | |
| 493-603, gnl|fr1|chrUn (57381883-57381772) | |
| 493-603, gnl|galGal2|chr8 (25527805-25527916) | |
| 493-603, gnl|hg17|chr1 (55259011-55259167) | |
| 493-603, gnl|Hg17|chr1 (55259125-55259016) | |
| 493-603, gnl|mm7|chr4 (105800008-105799860) | |
| 493-603, gnl|Mm7|chr4 (105799892-105800001) | |
| 493-603, gnl|monDom2|scaffold_40 (20880433-20880308) | |
| 493-603, gnl|oryCun1|scaffold_200729 (89726-89571) | |
| 493-603, gnl|panTro1|chr1 (53581309-53581465) | |
| 493-603, gnl|rheMac2|chr1 (57931072-57931228) | |
| 493-603, gnl|rn3|chr5 (127488504-127488360) | |
| 493-603, gnl|tetNig1|chr1_random (2421720-2421831) | |
| 493-603, gnl|xenTro1|scaffold_1 (5346339-5346187) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-194, gnl|bosTau2|chr3 (58746246-58746362) | |
| 78-194, gnl|canFam2|chr5 (57170176-57170043) | |
| 78-194, gnl|danRer3|chrUn (89437921-89438056) | |
| 78-194, gnl|dasNov1|scaffold_12579 (46925-46792) | |
| 78-194, gnl|echTel1|scaffold_321511 (151868-151735) | |
| 78-194, gnl|fr1|chrUn (57380671-57380547) | |
| 78-194, gnl|galGal2|chr8 (25531182-25531318) | |
| 78-194, gnl|hg17|chr1 (55267314-55267449) | |
| 78-194, gnl|Hg17|chr1 (55267436-55267320) | |
| 78-194, gnl|loxAfr1|scaffold_2981 (90971-90837) | |
| 78-194, gnl|mm7|chr4 (105792529-105792396) | |
| 78-194, gnl|Mm7|chr4 (105792405-105792521) | |
| 78-194, gnl|monDom2|scaffold_40 (20870156-20870019) | |
| 78-194, gnl|oryCun1|scaffold_200729 (84696-84562) | |
| 78-194, gnl|panTro1|chr1 (53589574-53589709) | |
| 78-194, gnl|rheMac2|chr1 (57939371-57939506) | |
| 78-194, gnl|rn3|chr5 (127480987-127480855) | |
| 78-194, gnl|tetNig1|chr1_random (2422702-2422834) | |
| 78-194, gnl|xenTro1|scaffold_1 (5339856-5339709) | |
| 289-407, gnl|bosTau2|chr3 (58753433-58753551) | |
| 289-407, gnl|canFam2|chr5 (57176780-57176675) | |
| 289-407, gnl|danRer3|chrUn (89433586-89433691) | |
| 289-407, gnl|dasNov1|scaffold_12579 (54172-54067) | |
| 289-407, gnl|echTel1|scaffold_321511 (156046-155941) | |
| 289-407, gnl|fr1|chrUn (57381274-57381184) | |
| 289-407, gnl|galGal2|chr8 (25528946-25529051) | |
| 289-407, gnl|hg17|chr1 (55261459-55261564) | |
| 289-407, gnl|Hg17|chr1 (55261584-55261466) | |
| 289-407, gnl|loxAfr1|scaffold_2981 (103027-102922) | |
| 289-407, gnl|mm7|chr4 (105796997-105796893) | |
| 289-407, gnl|Mm7|chr4 (105796871-105796989) | |
| 289-407, gnl|monDom2|scaffold_40 (20877721-20877616) | |
| 289-407, gnl|oryCun1|scaffold_200729 (87944-87839) | |
| 289-407, gnl|panTro1|chr1 (53583741-53583846) | |
| 289-407, gnl|rheMac2|chr1 (57933516-57933621) | |
| 289-407, gnl|rn3|chr5 (127486589-127486485) | |
| 289-407, gnl|tetNig1|chr1_random (2422091-2422191) | |
| 289-407, gnl|xenTro1|scaffold_1 (5343498-5343394) | |
| 493-603, gnl|bosTau2|chr3 (58755714-58755823) | |
| 493-603, gnl|canFam2|chr5 (57179141-57178988) | |
| 493-603, gnl|danRer3|chrUn (89428878-89428993) | |
| 493-603, gnl|dasNov1|scaffold_12579 (57036-56880) | |
| 493-603, gnl|echTel1|scaffold_321511 (158749-158593) | |
| 493-603, gnl|fr1|chrUn (57381883-57381772) | |
| 493-603, gnl|galGal2|chr8 (25527805-25527916) | |
| 493-603, gnl|hg17|chr1 (55259011-55259167) | |
| 493-603, gnl|Hg17|chr1 (55259125-55259016) | |
| 493-603, gnl|mm7|chr4 (105800008-105799860) | |
| 493-603, gnl|Mm7|chr4 (105799892-105800001) | |
| 493-603, gnl|monDom2|scaffold_40 (20880433-20880308) | |
| 493-603, gnl|oryCun1|scaffold_200729 (89726-89571) | |
| 493-603, gnl|panTro1|chr1 (53581309-53581465) | |
| 493-603, gnl|rheMac2|chr1 (57931072-57931228) | |
| 493-603, gnl|rn3|chr5 (127488504-127488360) | |
| 493-603, gnl|tetNig1|chr1_random (2421720-2421831) | |
| 493-603, gnl|xenTro1|scaffold_1 (5346339-5346187) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| cki (0.165235) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| cty (0.10408) |