Non-Coding RNA Search

Ss1.1-rpigcb_15154.5

Sequence:


               
               TTAAAAGACCAGTGATCAGAAATACTTTTTTTTAAAAAAATGGTGCCACTTTGGTCTGGA
GCTAGCTACTCTGTTAGGCTTGAATTCATTTGTGTATCTTTTAATTCTTAAAAACATTCC
ATTAGAAGCATGAATTTTTCAGCTCAAACTCTGTGGATCAGACTTCATAGCAGACTGATC
TAAAACATATACAACATGCTGATCTTTTTAAAGATAAAATGATTTTCTGAATTTTTCTTC
TTCAACTATTGCAACTGATTTGATAACTTCCTTTTCCTGACCTGCATAGTACAATAGAAT
GTGGTGTAAGTTACATTTTTATGATGACTGGGCAGATGTTTATATAAACTGTGTTGACTG
TTAAAAGTTTCTTCATGATGCAGAGTTTTTTACATACATGAGAGGACTTAGCACATTTGA
CAGTTTTTGAATTTTAATATGAATACAGTGTAATATGGTGACTGCTTTATACAGGTAAAA
AACTGGAATTCTGTGATCAATATGGCTGCTGTACTGTATACTAATATTTAATTAAAAATG
GTCATTGATTACACTTGTTCAGCATTGGAATAAAATTATATGTATGAGGGAATGATATGA
GAGTTAACTTTGAGATCAGAAGAAAAGGATGACCTGAAAGTTACTGGAACATTTTAGGAA
AAGAACATTGCAGAGGGAAAAGCTAAGTGTATAGAAACAGGTTTTTATCCAAATAAGGTC
TGCATCTTATGACCAGAATGCAACAAGCTTGCTAAATCATAAAATGTTTAAGCTTATGGG
ATTTTCTGTCTCTATAGCTTGTAGCTTTGAAATTCACCTTCTGTACTTGGCATGGAAAAG
TTAATTTGTAGTGTTCTCAAGGTTCTAGAGATGGTGTGATGTGTGACAACCTCAAATGTG
AATGTCTTGATTTTATTTTTATGACTTTACCTATAACATTTCCTGTACCCAAAGCTAAAC
ACTGGAATAATACTGAATTGTCACTTAATTTAACATAGGCAATTGTTTTTAATGAGTAGC
TTGTCTCAGTGTCATGTGTGTGTTTTCTTTTACATAATTTTATTTGAATATGGACAGTTT
ATATGTTGCCTTTTTCTGTTCAAATTTGCATGGCCCTCAGAGTTGGCTGTGGAGTATGTC
TCTTGTGGAAATACTTTCAGAATAATGTTCCCTAGGAAGAAAGTAACGTCCCTGGGTCGA
GGGAAGGAATGCCATACATGCTGTCTTTTCAGGGCTGAAACACTCCACTTTATGGCAGGA
AAATAACACAGGTCACACTGATTTTCAGCAATGAAAACCAAGGACTGTAAGTACTTAGTA
TTTTCACCATTCCAGTTTCTTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAAGACCAGTGATCAGAAATACTTTTTTTTAAAAAAATGGTGCCACTTTGGTCTGGA
GCTAGCTACTCTGTTAGGCTTGAATTCATTTGTGTATCTTTTAATTCTTAAAAACATTCC
ATTAGAAGCATGAATTTTTCAGCTCAAACTCTGTGGATCAGACTTCATAGCAGACTGATC
TAAAACATATACAACATGCTGATCTTTTTAAAGATAAAATGATTTTCTGAATTTTTCTTC
TTCAACTATTGCAACTGATTTGATAACTTCCTTTTCCTGACCTGCATAGTACAATAGAAT
GTGGTGTAAGTTACATTTTTATGATGACTGGGCAGATGTTTATATAAACTGTGTTGACTG
TTAAAAGTTTCTTCATGATGCAGAGTTTTTTACATACATGAGAGGACTTAGCACATTTGA
CAGTTTTTGAATTTTAATATGAATACAGTGTAATATGGTGACTGCTTTATACAGGTAAAA
AACTGGAATTCTGTGATCAATATGGCTGCTGTACTGTATACTAATATTTAATTAAAAATG
GTCATTGATTACACTTGTTCAGCATTGGAATAAAATTATATGTATGAGGGAATGATATGA
GAGTTAACTTTGAGATCAGAAGAAAAGGATGACCTGAAAGTTACTGGAACATTTTAGGAA
AAGAACATTGCAGAGGGAAAAGCTAAGTGTATAGAAACAGGTTTTTATCCAAATAAGGTC
TGCATCTTATGACCAGAATGCAACAAGCTTGCTAAATCATAAAATGTTTAAGCTTATGGG
ATTTTCTGTCTCTATAGCTTGTAGCTTTGAAATTCACCTTCTGTACTTGGCATGGAAAAG
TTAATTTGTAGTGTTCTCAAGGTTCTAGAGATGGTGTGATGTGTGACAACCTCAAATGTG
AATGTCTTGATTTTATTTTTATGACTTTACCTATAACATTTCCTGTACCCAAAGCTAAAC
ACTGGAATAATACTGAATTGTCACTTAATTTAACATAGGCAATTGTTTTTAATGAGTAGC
TTGTCTCAGTGTCATGTGTGTGTTTTCTTTTACATAATTTTATTTGAATATGGACAGTTT
ATATGTTGCCTTTTTCTGTTCAAATTTGCATGGCCCTCAGAGTTGGCTGTGGAGTATGTC
TCTTGTGGAAATACTTTCAGAATAATGTTCCCTAGGAAGAAAGTAACGTCCCTGGGTCGA
GGGAAGGAATGCCATACATGCTGTCTTTTCAGGGCTGAAACACTCCACTTTATGGCAGGA
AAATAACACAGGTCACACTGATTTTCAGCAATGAAAACCAAGGACTGTAAGTACTTAGTA
TTTTCACCATTCCAGTTTCTTTTC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               11-576, gnl|bosTau2|chr10 (54293449-54292888)
               

               
               11-576, gnl|Hg17|chr14 (66869913-66870512)
               

               
               11-576, gnl|Mm7|chr12 (76796734-76797369)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-576, gnl|bosTau2|chr10 (54293449-54292888)
               

               
               11-576, gnl|Hg17|chr14 (66869913-66870512)
               

               
               11-576, gnl|Mm7|chr12 (76796734-76797369)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               cty (0.72856)
               

               
               sag (0.36543)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.72856)
               

               
               sag (0.36543)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               clu (0.119646)
               

               
               spc (0.113366)

	11-576, gnl\|bosTau2\|chr10 (54293449-54292888)
	11-576, gnl\|Hg17\|chr14 (66869913-66870512)
	11-576, gnl\|Mm7\|chr12 (76796734-76797369)

	cty (0.72856)
	sag (0.36543)
	pla (0.133672)
	cbr (0.127975)
	clu (0.119646)
	spc (0.113366)