Non-Coding RNA Search

Ss1.1-rpigcb_15241.5

Sequence:


               
               AAGTTCACGTCAGGATTTTCTGAGCCTTGACAAAGTTTCATGCAAGAGAATACCACTTTG
ATAACTGTGTACTTGAGAAACTATCCTCTTTTCCTGGGAATAATCAGCTTTAAATATTGG
TGGTGAGCTCTTTCTTTTAGAATCAGGATTATTTTGATAACCTTAACTTGTTATATGTGG
AGATTTAAATTCAAAAAAGTGCTAAGAGTAATATAGCATATTTTGAATATTCAGTGTCAC
TAAGAAGTAGTGTCAGTGACCACTTTAAGAACATGACTTTGGGTGGCACCTCTTAAAAAG
TGCACAGCTCCTTACTGCTTTCCGTTTTTGTTACGGGCAGGACAGGATTGTTAATGTGTT
TCCTTCCATCAGTGGTTTGTGTTCTAGATTTAAAGAGAAGTGATGGTTGTAACATTTTTA
GCTGAGTAGTGATCCCCATTTGAAACTCCTAGAAATGTTTTTGCTACCAAATAGGTCATG
TTTTATGGTACTCAAGCCATCCAAAAGTGAAAGAATGAATTTGAATCTATGCAGGACAAA
AATTGTATAGGAACCATAGCACTTTGGAGAAACATGAAGTTAGAAAAGAAATACAGTGCA
ATTCTGTTGTAACAGTATTTCACCACATTTAAACTAGCTTAGAACCTGTGAGGTTTAATG
CCTTAGCTTCTTATTACTAATGACCTAGGGAATTGTTATTAGCATCAAGCATGTAGTTGA
CATCTCTGTAGTTATTCAGGATAGTCAAGGCAGCAGAGAAGATTGCCAGGGAAAAAAAAT
CTGTAAGACAAGAGGGACTTTTTATTGTATATAAGAAAAATAACAAACTAGTGTGTTTAG
GACTATCACTGTTGGGAGTTCCTGTGTGACTCAGTGGGTTAAGAACCTGACTAGTATCCT
TGAGGTTGTGGGTTCAATCCCTGGCCTCACTTAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTCACGTCAGGATTTTCTGAGCCTTGACAAAGTTTCATGCAAGAGAATACCACTTTG
ATAACTGTGTACTTGAGAAACTATCCTCTTTTCCTGGGAATAATCAGCTTTAAATATTGG
TGGTGAGCTCTTTCTTTTAGAATCAGGATTATTTTGATAACCTTAACTTGTTATATGTGG
AGATTTAAATTCAAAAAAGTGCTAAGAGTAATATAGCATATTTTGAATATTCAGTGTCAC
TAAGAAGTAGTGTCAGTGACCACTTTAAGAACATGACTTTGGGTGGCACCTCTTAAAAAG
TGCACAGCTCCTTACTGCTTTCCGTTTTTGTTACGGGCAGGACAGGATTGTTAATGTGTT
TCCTTCCATCAGTGGTTTGTGTTCTAGATTTAAAGAGAAGTGATGGTTGTAACATTTTTA
GCTGAGTAGTGATCCCCATTTGAAACTCCTAGAAATGTTTTTGCTACCAAATAGGTCATG
TTTTATGGTACTCAAGCCATCCAAAAGTGAAAGAATGAATTTGAATCTATGCAGGACAAA
AATTGTATAGGAACCATAGCACTTTGGAGAAACATGAAGTTAGAAAAGAAATACAGTGCA
ATTCTGTTGTAACAGTATTTCACCACATTTAAACTAGCTTAGAACCTGTGAGGTTTAATG
CCTTAGCTTCTTATTACTAATGACCTAGGGAATTGTTATTAGCATCAAGCATGTAGTTGA
CATCTCTGTAGTTATTCAGGATAGTCAAGGCAGCAGAGAAGATTGCCAGGGAAAAAAAAT
CTGTAAGACAAGAGGGACTTTTTATTGTATATAAGAAAAATAACAAACTAGTGTGTTTAG
GACTATCACTGTTGGGAGTTCCTGTGTGACTCAGTGGGTTAAGAACCTGACTAGTATCCT
TGAGGTTGTGGGTTCAATCCCTGGCCTCACTTAGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               469-586, + strand, RNAz p=0.561816

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               469-586, + strand, RNAz p=0.561816

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-852, gnl|bosTau2|chr3 (10707418-10708237)
               

               
               1-852, gnl|Hg17|chr1 (152682106-152681121)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr3 (10707418-10708237)
               

               
               1-852, gnl|Hg17|chr1 (152682106-152681121)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-852, gnl\|bosTau2\|chr3 (10707418-10708237)
	1-852, gnl\|Hg17\|chr1 (152682106-152681121)

	fhi (0.169578)
	lnt (0.142308)
	ste (0.135208)
	jca (0.11396)
	cty (0.10408)