Non-Coding RNA Search

Ss1.1-rpigcb_15253.5

Sequence:


               
               GCCACCTCGTCGGTGTCCAAGGGCTGCTTTGTGTTTAAACCAAATGTTAAGAAGAGAAAG
ATCTCCGTGCCAGTAGAGGACTATTTTAATAAAGGGAAAAATGAGTCTGAGGACAGTAAG
CTTCGATTTGAAACTTATCAGTCGATATGGCAGCAGATGAAATCTGAAACTGAGCAACTA
CAAGAGGAATTAAATAAAAACCTGTTTGACAGTCTAATTGAATTTCTGCAAAAATCTCAT
TCTGGATTCCAGAAGAATTCAAGAGACTGGGGCTGTCAAATAAAGCTCAGAGAAATTCCA
GCTGCTGCTCTTGTTCTAGGTGTGAATGTAACAGATCATGACTTAACATTCAGGAGTCTA
ACAGAAGCCCTTCAGAATAATGTCACTCCATATGTAGTCTCATTGCAAGCTAAAGATTGT
CCAGATATTAAGCATTTTTTGCAAAAGCTCACCTCACAATTGATGGACTGCAATGTAGAT
GTGCCATCCAAAGAGAAAGAAAGTGTTCAGTTCACTCAGAAGAAGACACATTATTCCATG
GATTCTCTTTCCAGTTGGTACATGAATGTCACACAGAAGACAGAACCAAAAATGCCAAGA
AAAAAGAGGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACCTCGTCGGTGTCCAAGGGCTGCTTTGTGTTTAAACCAAATGTTAAGAAGAGAAAG
ATCTCCGTGCCAGTAGAGGACTATTTTAATAAAGGGAAAAATGAGTCTGAGGACAGTAAG
CTTCGATTTGAAACTTATCAGTCGATATGGCAGCAGATGAAATCTGAAACTGAGCAACTA
CAAGAGGAATTAAATAAAAACCTGTTTGACAGTCTAATTGAATTTCTGCAAAAATCTCAT
TCTGGATTCCAGAAGAATTCAAGAGACTGGGGCTGTCAAATAAAGCTCAGAGAAATTCCA
GCTGCTGCTCTTGTTCTAGGTGTGAATGTAACAGATCATGACTTAACATTCAGGAGTCTA
ACAGAAGCCCTTCAGAATAATGTCACTCCATATGTAGTCTCATTGCAAGCTAAAGATTGT
CCAGATATTAAGCATTTTTTGCAAAAGCTCACCTCACAATTGATGGACTGCAATGTAGAT
GTGCCATCCAAAGAGAAAGAAAGTGTTCAGTTCACTCAGAAGAAGACACATTATTCCATG
GATTCTCTTTCCAGTTGGTACATGAATGTCACACAGAAGACAGAACCAAAAATGCCAAGA
AAAAAGAGGACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61875982|ref|XP_616413.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61875982|ref|XP_616413.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               84-589, gnl|bosTau2|chr27 (21248874-21248393)
               

               
               84-589, gnl|Hg17|chr11 (79376290-79376792)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-589, gnl|bosTau2|chr27 (21248874-21248393)
               

               
               84-589, gnl|Hg17|chr11 (79376290-79376792)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               spl (0.143184)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.143184)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	84-589, gnl\|bosTau2\|chr27 (21248874-21248393)
	84-589, gnl\|Hg17\|chr11 (79376290-79376792)

	spl (0.143184)
	pla (0.133672)
	nmm (0.132802)
	pgl (0.118483)
	cty (0.10408)