Non-Coding RNA Search

Ss1.1-rpigcb_15304.5

Sequence:


               
               CAGGAAGAAGTTACATGATATTTTATATTGAATTCTTCTTTAAAAAATTGAATTCTTATA
TTAGAATTCAGTGCATCACTTTCCATGTATTGGTTTACCAAGGCAGTTACTTTTAAGGGG
AAGAAACTTTTTAATTACTTCCATAGACATGACATGATCCCATTCCTCAGGTGTGTTGAG
ATAAAAACATGGCTAATTAAGGAAAGTCATTTCAAGTCACATGGACTGGAAATTGTATTT
CTAAAAATATATTACCAGCAAATTTTGTGGTAATAAAAACAATTTGGCAATCCCAGAGAG
GTTATGTACTTCCCAACATATTTTAAAACCTTGACTTAAGCTAACATAATTTGCTTTGCA
TCAATATAAATTCTTAGAACCAATTCCAGTATAGATCCCTAGTAAAAGTTTTAACTCGGC
ACAATTAATCTTCATCTTTCACATCTCAAATAGAATCAGTGTTTCTTGACTATGTATTTT
TAAAATTTATTTGTGCAATATATTACTAAATTAGTTCATGTTTTCATTTTACTTTTCAAG
TTCAGAGACAATATTACTTAAATTCATGGAAAAGCTAATTATGGGTGGATCACCTCCTTT
TTTCCACCTTTGAGCCTTTCCTGTCCTTCTTTATAGCCAGCATGACTCAGATTCCTTTGT
ATATAGTAAACTTTAGAAAATGTATAATTTTTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAAGAAGTTACATGATATTTTATATTGAATTCTTCTTTAAAAAATTGAATTCTTATA
TTAGAATTCAGTGCATCACTTTCCATGTATTGGTTTACCAAGGCAGTTACTTTTAAGGGG
AAGAAACTTTTTAATTACTTCCATAGACATGACATGATCCCATTCCTCAGGTGTGTTGAG
ATAAAAACATGGCTAATTAAGGAAAGTCATTTCAAGTCACATGGACTGGAAATTGTATTT
CTAAAAATATATTACCAGCAAATTTTGTGGTAATAAAAACAATTTGGCAATCCCAGAGAG
GTTATGTACTTCCCAACATATTTTAAAACCTTGACTTAAGCTAACATAATTTGCTTTGCA
TCAATATAAATTCTTAGAACCAATTCCAGTATAGATCCCTAGTAAAAGTTTTAACTCGGC
ACAATTAATCTTCATCTTTCACATCTCAAATAGAATCAGTGTTTCTTGACTATGTATTTT
TAAAATTTATTTGTGCAATATATTACTAAATTAGTTCATGTTTTCATTTTACTTTTCAAG
TTCAGAGACAATATTACTTAAATTCATGGAAAAGCTAATTATGGGTGGATCACCTCCTTT
TTTCCACCTTTGAGCCTTTCCTGTCCTTCTTTATAGCCAGCATGACTCAGATTCCTTTGT
ATATAGTAAACTTTAGAAAATGTATAATTTTTTCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               47-696, gnl|bosTau2|chr11 (24613280-24612623)
               

               
               47-696, gnl|Hg17|chr2 (48516518-48517186)
               

               
               47-696, gnl|Mm7|chr17 (86794806-86795462)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-696, gnl|bosTau2|chr11 (24613280-24612623)
               

               
               47-696, gnl|Hg17|chr2 (48516518-48517186)
               

               
               47-696, gnl|Mm7|chr17 (86794806-86795462)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               liv (0.438853)
               

               
               fce (0.271592)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.438853)
               

               
               fce (0.271592)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	47-696, gnl\|bosTau2\|chr11 (24613280-24612623)
	47-696, gnl\|Hg17\|chr2 (48516518-48517186)
	47-696, gnl\|Mm7\|chr17 (86794806-86795462)