Non-Coding RNA Search

Ss1.1-rpigcb_15315.5

Sequence:


               
               GAGCTAAATTCTTGTGTTCTTTCGTAGAAGAAAATAGCCGACCATTAACAATAGCAGCAA
AACCTGATGAGTCTCATTGAGTATACACTCAGAAAATGTTTTGAATACTTATCCATTTTG
GTGCAAATAAAAGTTGGGTTTTCTGTCCCCCACTATCTAAGATGTACTAATTTCCACCAA
GCCTTAAACAGGTTTGTCATGTTTTGCATTCATGAAGCTGACCGTATTTTGTAACTAAGT
TTGTATACACAGAAGTGTGATCATTTCAGAAGTTTGGTACCCTCTGAATGATCTGATAAA
AACAATTGAATGTACAGTTAACAGTAAACAGCATTCCTGTAAACAGTTTTTGTCCTTGCC
CTTCACATTGTGTTGATCATTTGTTACTTACAGCCACCCTTACTGTGCAGGTCTAAGACT
TAGCCACTGCATCTTTTTGTGCCTTCCTTTGACTTTCTTTTTGGCCGTTAGCACAGGTAC
CCATATAAGATGCTGAGGTCAAGGCTAATGAATATGTCTTTATAGTATCTCACCTAATGT
TCTACAATTCAGTCTGAGGCCTTAAGCAAAATCTGAAAATGTTTATATGGTCTTGTTTTT
ATCAAGTTGTGTCAACTTGGACTTTTAGAGAAATGTGAAGAAAGTCTATATTTAAATGTA
TAATTGTGGAGGATTTTAGCTCTTAGAATTGAAACCGATGTCAGCCTGCTAACCTATATG
TTTTATCAAAAGAAAGAGATGCTTCCAAAAATATTTTTGGTGTAGGGTATTTAAAATAAA
GCTGAATTGTGTAATTTATTATGTGAAATAAATTTGTAATGAATCATTGACAGTACATTG
TTATTTTACCTAATGATTGCTGCAGATAGTCTGAAGGTACAGATAACTAACGGACTAAAT
TACTTGTCCATTTTTTGATTCCATCATCAATATCAACTTGCTTAGAAATCAGCAAGAAAA
GGTGTACTTTATGAGAATCATGAGTCATGGGAGCAGAGGCTGTAATATTTAAAAGAAAAG
AAAGCCAGAATTCTGTTGTGGTACAGTCAGAAACAAATCTCACTCGTATTCATAAGGATG
CAGGTTCCATCTCTGGCCTTGTTCAGTGCGTGAAGGATCTAGGGTTGCCATGAGCTGTGA
TGTAGGTCGCAGACGTGGCTCAGATCCTGTGTAGCTGTGGTGCAGGCCGGCAGCTGTAGC
TCTCATCGACCCCTAGCCTGGGAGCTTCCGTATGTCACAGGTGCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTAAATTCTTGTGTTCTTTCGTAGAAGAAAATAGCCGACCATTAACAATAGCAGCAA
AACCTGATGAGTCTCATTGAGTATACACTCAGAAAATGTTTTGAATACTTATCCATTTTG
GTGCAAATAAAAGTTGGGTTTTCTGTCCCCCACTATCTAAGATGTACTAATTTCCACCAA
GCCTTAAACAGGTTTGTCATGTTTTGCATTCATGAAGCTGACCGTATTTTGTAACTAAGT
TTGTATACACAGAAGTGTGATCATTTCAGAAGTTTGGTACCCTCTGAATGATCTGATAAA
AACAATTGAATGTACAGTTAACAGTAAACAGCATTCCTGTAAACAGTTTTTGTCCTTGCC
CTTCACATTGTGTTGATCATTTGTTACTTACAGCCACCCTTACTGTGCAGGTCTAAGACT
TAGCCACTGCATCTTTTTGTGCCTTCCTTTGACTTTCTTTTTGGCCGTTAGCACAGGTAC
CCATATAAGATGCTGAGGTCAAGGCTAATGAATATGTCTTTATAGTATCTCACCTAATGT
TCTACAATTCAGTCTGAGGCCTTAAGCAAAATCTGAAAATGTTTATATGGTCTTGTTTTT
ATCAAGTTGTGTCAACTTGGACTTTTAGAGAAATGTGAAGAAAGTCTATATTTAAATGTA
TAATTGTGGAGGATTTTAGCTCTTAGAATTGAAACCGATGTCAGCCTGCTAACCTATATG
TTTTATCAAAAGAAAGAGATGCTTCCAAAAATATTTTTGGTGTAGGGTATTTAAAATAAA
GCTGAATTGTGTAATTTATTATGTGAAATAAATTTGTAATGAATCATTGACAGTACATTG
TTATTTTACCTAATGATTGCTGCAGATAGTCTGAAGGTACAGATAACTAACGGACTAAAT
TACTTGTCCATTTTTTGATTCCATCATCAATATCAACTTGCTTAGAAATCAGCAAGAAAA
GGTGTACTTTATGAGAATCATGAGTCATGGGAGCAGAGGCTGTAATATTTAAAAGAAAAG
AAAGCCAGAATTCTGTTGTGGTACAGTCAGAAACAAATCTCACTCGTATTCATAAGGATG
CAGGTTCCATCTCTGGCCTTGTTCAGTGCGTGAAGGATCTAGGGTTGCCATGAGCTGTGA
TGTAGGTCGCAGACGTGGCTCAGATCCTGTGTAGCTGTGGTGCAGGCCGGCAGCTGTAGC
TCTCATCGACCCCTAGCCTGGGAGCTTCCGTATGTCACAGGTGCAGCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-1010, gnl|bosTau2|chr6 (23294496-23295503)
               

               
               2-1010, gnl|Hg17|chr4 (24798716-24797727)
               

               
               2-1010, gnl|Mm7|chr5 (52014307-52013289)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1010, gnl|bosTau2|chr6 (23294496-23295503)
               

               
               2-1010, gnl|Hg17|chr4 (24798716-24797727)
               

               
               2-1010, gnl|Mm7|chr5 (52014307-52013289)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               spl (0.286369)
               

               
               thg (0.253582)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               thg (0.253582)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               lyg (0.133103)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	2-1010, gnl\|bosTau2\|chr6 (23294496-23295503)
	2-1010, gnl\|Hg17\|chr4 (24798716-24797727)
	2-1010, gnl\|Mm7\|chr5 (52014307-52013289)

	spl (0.286369)
	thg (0.253582)
	fhi (0.169578)
	nco (0.161734)
	liv (0.146284)
	cst (0.140036)
	lyg (0.133103)
	cty (0.10408)
	ldo (0.0970026)