Non-Coding RNA Search

Ss1.1-rpigcb_15379.5

Sequence:


               
               ATGTGGGCCCCCAGACTATCACAGCTGCCCCCAGTCTCCCCGGCCTCTTTGGCAGCTCTG
CCACATCCCCCCACCCCACCAAAGGGGGCTACGCAGTCACTGACTTCCTCACCTACAACT
GCCTCACGAGCAACGCGGACTTGTACAGCGACTGCCTGTGCACCTTCTGGACCTGCCCCC
ACTGTGAGCTGCACGTGCCTCTGACACCCTTGGAGCGCATCGCACATGAGAACACCTGCC
CCCAGGCCCCGCGGGATGCTCCCCCAGGGGCTGAGGAGGCCGCCCCCGAGCCCCTCCGGA
AGGTGTCTGACCTGCAGAGGCCCTACCACTGCAAGGCCTGCCAGAAGGACTTTCTGTTCA
CGCCCACGGATGTCTTGCGCCACCAGAGGCAGCATGTGTGAGCCTGGGCAGCCCCGGACC
AGGACCAGGGCTGGGACTCCCGACCGAGCCCCAGCCTCGCCCCGCAGGAAGGGGCGCCAG
TTCGGGAACCAAGTCTCCTGTCACGCCCGCTCCTGCCCACCCAAGGAGTGGCAGCTGCCC
CCCATCGGTCCTGCTCCAGGAGGACACGGGGAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTGGGCCCCCAGACTATCACAGCTGCCCCCAGTCTCCCCGGCCTCTTTGGCAGCTCTG
CCACATCCCCCCACCCCACCAAAGGGGGCTACGCAGTCACTGACTTCCTCACCTACAACT
GCCTCACGAGCAACGCGGACTTGTACAGCGACTGCCTGTGCACCTTCTGGACCTGCCCCC
ACTGTGAGCTGCACGTGCCTCTGACACCCTTGGAGCGCATCGCACATGAGAACACCTGCC
CCCAGGCCCCGCGGGATGCTCCCCCAGGGGCTGAGGAGGCCGCCCCCGAGCCCCTCCGGA
AGGTGTCTGACCTGCAGAGGCCCTACCACTGCAAGGCCTGCCAGAAGGACTTTCTGTTCA
CGCCCACGGATGTCTTGCGCCACCAGAGGCAGCATGTGTGAGCCTGGGCAGCCCCGGACC
AGGACCAGGGCTGGGACTCCCGACCGAGCCCCAGCCTCGCCCCGCAGGAAGGGGCGCCAG
TTCGGGAACCAAGTCTCCTGTCACGCCCGCTCCTGCCCACCCAAGGAGTGGCAGCTGCCC
CCCATCGGTCCTGCTCCAGGAGGACACGGGGAGGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-119, - strand, RNAz p=0.861332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.861332

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-128, gnl|bosTau2|chr18 (47354267-47354394)
               

               
               1-128, gnl|Hg17|chr19 (52575953-52576080)
               

               
               1-128, gnl|Mm7|chr7 (13961376-13961249)
               


               
               259-464, gnl|bosTau2|chr18 (47355416-47355622)
               

               
               259-464, gnl|Hg17|chr19 (52577059-52577298)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-128, gnl|bosTau2|chr18 (47354267-47354394)
               

               
               1-128, gnl|Hg17|chr19 (52575953-52576080)
               

               
               1-128, gnl|Mm7|chr7 (13961376-13961249)
               


               
               259-464, gnl|bosTau2|chr18 (47355416-47355622)
               

               
               259-464, gnl|Hg17|chr19 (52577059-52577298)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               clu (0.717875)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.717875)
               

               
               cst (0.140036)
               

               
               ese (0.126502)
               

               
               cty (0.10408)

	1-128, gnl\|bosTau2\|chr18 (47354267-47354394)
	1-128, gnl\|Hg17\|chr19 (52575953-52576080)
	1-128, gnl\|Mm7\|chr7 (13961376-13961249)

	259-464, gnl\|bosTau2\|chr18 (47355416-47355622)
	259-464, gnl\|Hg17\|chr19 (52577059-52577298)