Non-Coding RNA Search

Ss1.1-rpigcb_15889.5

Sequence:


               
               CAGGAGGCATCTGGAGGGTTCCCCGAGCCAACTGCAGTGTCTATGAGAGCTGTGTGGATT
GTGTCCTTGCCCGGGACCCCCACTGTGCCTGGGACCCCCAGTCCCAAAACTGCCGCCTCC
TGCCCACCCCTATCCCGAAGTTCTGGAAGCAGGACATGGAGCAAGGGAACCCAGAGTGGG
CGTGTGCCAATGGCCCCAGGGGCAGGAGCCTCGGGCCTCAGATCCGCCCCCAAATCATCA
AAGAAGTCCTGGCCATCCCCAACTCCATCCTGGAGCTCCCCTGCCCCCGTCTCTCAGCTC
TGGCCTCTTACCACTGGAGTCATGGCACAACGACAATCCCGGACACCTCTTCCATGGTCT
ACCGCGGCTCCCTCTTGCTGCTGCTGCGAGATGGTGTGGGGGGTCTCTATCAGTGCTGGG
CCACCGAGAATGACTTCTCATACCCTGTGGTCTCCTACTGGGTGGACAGTCAGGACCAGC
CCCTGGCCCTGGATCCCAAACTGGCGGGCATCCCCCGGGAGCGCGTGGAAGCCCCGCTGA
CCAGGGTCGGCGGTGGGGCCGCCCCAGCTGCCCAGCGGTCCTACTGGCCCCACTTCATCA
CCGTCACTGTGCTTCTAGCCTTAGTGTTTTCAGGAGCCCTCATCATCCTCCTCGCCTCCC
CGCTGGGGGCCCTCCGAGCCCGGGGAAAGGTCCAAGGCTGTGGGACCCTGCCCCCCGGGG
AGAAGGCCCCCTTGAGCCAGGAGCAGTACCTCCCACCCACCAAGGAATGCAGGACCTCTG
CCTGTGATGTGGATGCCGCCGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGAGGCATCTGGAGGGTTCCCCGAGCCAACTGCAGTGTCTATGAGAGCTGTGTGGATT
GTGTCCTTGCCCGGGACCCCCACTGTGCCTGGGACCCCCAGTCCCAAAACTGCCGCCTCC
TGCCCACCCCTATCCCGAAGTTCTGGAAGCAGGACATGGAGCAAGGGAACCCAGAGTGGG
CGTGTGCCAATGGCCCCAGGGGCAGGAGCCTCGGGCCTCAGATCCGCCCCCAAATCATCA
AAGAAGTCCTGGCCATCCCCAACTCCATCCTGGAGCTCCCCTGCCCCCGTCTCTCAGCTC
TGGCCTCTTACCACTGGAGTCATGGCACAACGACAATCCCGGACACCTCTTCCATGGTCT
ACCGCGGCTCCCTCTTGCTGCTGCTGCGAGATGGTGTGGGGGGTCTCTATCAGTGCTGGG
CCACCGAGAATGACTTCTCATACCCTGTGGTCTCCTACTGGGTGGACAGTCAGGACCAGC
CCCTGGCCCTGGATCCCAAACTGGCGGGCATCCCCCGGGAGCGCGTGGAAGCCCCGCTGA
CCAGGGTCGGCGGTGGGGCCGCCCCAGCTGCCCAGCGGTCCTACTGGCCCCACTTCATCA
CCGTCACTGTGCTTCTAGCCTTAGTGTTTTCAGGAGCCCTCATCATCCTCCTCGCCTCCC
CGCTGGGGGCCCTCCGAGCCCGGGGAAAGGTCCAAGGCTGTGGGACCCTGCCCCCCGGGG
AGAAGGCCCCCTTGAGCCAGGAGCAGTACCTCCCACCCACCAAGGAATGCAGGACCTCTG
CCTGTGATGTGGATGCCGCCGACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10433728|dbj|BAB14018.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10433728|dbj|BAB14018.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, - strand, RNAz p=0.60062
               

               
               399-518, + strand, RNAz p=0.515071

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, - strand, RNAz p=0.60062
               

               
               399-518, + strand, RNAz p=0.515071

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-135, gnl|bosTau2|chr3 (10458475-10458341)
               

               
               1-135, gnl|Hg17|chr1 (152957972-152958106)
               

               
               1-135, gnl|Mm7|chr3 (88552119-88551985)
               


               
               137-237, gnl|bosTau2|chr3 (10456743-10456643)
               

               
               137-237, gnl|canFam2|chr7 (44644528-44644080)
               

               
               137-237, gnl|echTel1|scaffold_266035 (5144-5618)
               

               
               137-237, gnl|hg17|chr1 (152958245-152958760)
               

               
               137-237, gnl|Hg17|chr1 (152958420-152958520)
               

               
               137-237, gnl|mm7|chr3 (88551834-88551387)
               

               
               137-237, gnl|Mm7|chr3 (88551701-88551604)
               

               
               137-237, gnl|monDom2|scaffold_59 (1369352-1368726)
               

               
               137-237, gnl|oryCun1|scaffold_187081 (1352-913)
               

               
               137-237, gnl|panTro1|chr1 (134909894-134910409)
               

               
               137-237, gnl|rheMac2|chr1 (134780518-134781036)
               

               
               137-237, gnl|rn3|chr2 (180504531-180504089)
               


               
               240-803, gnl|bosTau2|chr3 (10456265-10455702)
               

               
               240-803, gnl|Hg17|chr1 (152959271-152959834)
               

               
               240-803, gnl|Mm7|chr3 (88551051-88550488)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-135, gnl|bosTau2|chr3 (10458475-10458341)
               

               
               1-135, gnl|Hg17|chr1 (152957972-152958106)
               

               
               1-135, gnl|Mm7|chr3 (88552119-88551985)
               


               
               137-237, gnl|bosTau2|chr3 (10456743-10456643)
               

               
               137-237, gnl|canFam2|chr7 (44644528-44644080)
               

               
               137-237, gnl|echTel1|scaffold_266035 (5144-5618)
               

               
               137-237, gnl|hg17|chr1 (152958245-152958760)
               

               
               137-237, gnl|Hg17|chr1 (152958420-152958520)
               

               
               137-237, gnl|mm7|chr3 (88551834-88551387)
               

               
               137-237, gnl|Mm7|chr3 (88551701-88551604)
               

               
               137-237, gnl|monDom2|scaffold_59 (1369352-1368726)
               

               
               137-237, gnl|oryCun1|scaffold_187081 (1352-913)
               

               
               137-237, gnl|panTro1|chr1 (134909894-134910409)
               

               
               137-237, gnl|rheMac2|chr1 (134780518-134781036)
               

               
               137-237, gnl|rn3|chr2 (180504531-180504089)
               


               
               240-803, gnl|bosTau2|chr3 (10456265-10455702)
               

               
               240-803, gnl|Hg17|chr1 (152959271-152959834)
               

               
               240-803, gnl|Mm7|chr3 (88551051-88550488)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-119, - strand, RNAz p=0.60062
	399-518, + strand, RNAz p=0.515071

	1-135, gnl\|bosTau2\|chr3 (10458475-10458341)
	1-135, gnl\|Hg17\|chr1 (152957972-152958106)
	1-135, gnl\|Mm7\|chr3 (88552119-88551985)

	137-237, gnl\|bosTau2\|chr3 (10456743-10456643)
	137-237, gnl\|canFam2\|chr7 (44644528-44644080)
	137-237, gnl\|echTel1\|scaffold_266035 (5144-5618)
	137-237, gnl\|hg17\|chr1 (152958245-152958760)
	137-237, gnl\|Hg17\|chr1 (152958420-152958520)
	137-237, gnl\|mm7\|chr3 (88551834-88551387)
	137-237, gnl\|Mm7\|chr3 (88551701-88551604)
	137-237, gnl\|monDom2\|scaffold_59 (1369352-1368726)
	137-237, gnl\|oryCun1\|scaffold_187081 (1352-913)
	137-237, gnl\|panTro1\|chr1 (134909894-134910409)
	137-237, gnl\|rheMac2\|chr1 (134780518-134781036)
	137-237, gnl\|rn3\|chr2 (180504531-180504089)

	240-803, gnl\|bosTau2\|chr3 (10456265-10455702)
	240-803, gnl\|Hg17\|chr1 (152959271-152959834)
	240-803, gnl\|Mm7\|chr3 (88551051-88550488)