Non-Coding RNA Search

Ss1.1-rpigcb_15938.5

Sequence:


               
               CTTTAAAGTCATGGCCCCAGCTTTCTGGCCCGCTGTGCACTGAGGCTGTACGGAGCACTG
CGGGGACCCTGGGTGCCTGGCGGAGGCACATTTGGGCTGTGACAGGTGCATGTGGGACAT
GGAATCACTGCTCGGGGCTCAGGGGGAGACACGATGCTGGGAGAGGGTAGGTCCTGGACA
AAGCAGAGCCACTCGGGAATGGACCAGGCGTGTCATCGGTTAGGCAACCGCTGTGTGCCA
GGCACCGTGCCATGCCTTCCCTGCACCTTCTGAAGGGTGTTATTACTCCCATCTTACAGA
CAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGCTGAGATCCCCAGGGCCAGCCAGCTAAC
CAGGGGCAGAGCCAGGATCCCGATTCAGGTCAGTGTGGCCCCAGAGCCCTGATGTTCTCT
CCTCTGCGTCTCACCTGCCTGACAGGGGTCCTGGCTTCTCGAACCTCCATTTTAACTGAT
TCCCCCCAGGGGGAGGGGCGGGGGAGGAAACGGATGGTCCCCGCCTCCTCCTCACAATCC
CTCGATGCGGAGGCCTTCCTCCTCCTAGGGAGCGGCTTAGAGATGCTGCTGCTGCTGTTG
TTCCTGCTGTTGCTGCTACTGCCTCCACTGGTGATGCTCTGGTGGTGGCACCCCCAGGAT
GCCAGGCTGTCCTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGGAGGGTCCTGTGCTGG
GCAGCTGCCTGGCAGCAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAGGCCAGAGTCAG
CAGCAGGCCCTGAGATGGTGTCTGCAGCGGGCTCAGGGTCCCTGCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTAAAGTCATGGCCCCAGCTTTCTGGCCCGCTGTGCACTGAGGCTGTACGGAGCACTG
CGGGGACCCTGGGTGCCTGGCGGAGGCACATTTGGGCTGTGACAGGTGCATGTGGGACAT
GGAATCACTGCTCGGGGCTCAGGGGGAGACACGATGCTGGGAGAGGGTAGGTCCTGGACA
AAGCAGAGCCACTCGGGAATGGACCAGGCGTGTCATCGGTTAGGCAACCGCTGTGTGCCA
GGCACCGTGCCATGCCTTCCCTGCACCTTCTGAAGGGTGTTATTACTCCCATCTTACAGA
CAGGGGAAGGGGACGGAGCTCAGAGCGGCGAGCTGAGATCCCCAGGGCCAGCCAGCTAAC
CAGGGGCAGAGCCAGGATCCCGATTCAGGTCAGTGTGGCCCCAGAGCCCTGATGTTCTCT
CCTCTGCGTCTCACCTGCCTGACAGGGGTCCTGGCTTCTCGAACCTCCATTTTAACTGAT
TCCCCCCAGGGGGAGGGGCGGGGGAGGAAACGGATGGTCCCCGCCTCCTCCTCACAATCC
CTCGATGCGGAGGCCTTCCTCCTCCTAGGGAGCGGCTTAGAGATGCTGCTGCTGCTGTTG
TTCCTGCTGTTGCTGCTACTGCCTCCACTGGTGATGCTCTGGTGGTGGCACCCCCAGGAT
GCCAGGCTGTCCTGGCTTGTCTGCCTCCAGCACCGTGTAGCATGGAGGGTCCTGTGCTGG
GCAGCTGCCTGGCAGCAGAAGAGGCTGGAGCAGAGCACGCTGCACGCAGGCCAGAGTCAG
CAGCAGGCCCTGAGATGGTGTCTGCAGCGGGCTCAGGGTCCCTGCTGT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               346-462, - strand, RNAz p=0.78698
               

               
               543-782, - strand, RNAz p=0.999743

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               346-462, - strand, RNAz p=0.78698
               

               
               543-782, - strand, RNAz p=0.999743

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               643-781, - strand, RNAmicro p=0.998878
               

               
               650-738, + strand, RNAmicro p=0.997198

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               643-781, - strand, RNAmicro p=0.998878
               

               
               650-738, + strand, RNAmicro p=0.997198

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               3-144, gnl|bosTau2|chr19 (36703450-36703307)
               

               
               3-144, gnl|canFam2|chr9 (24041774-24041568)
               

               
               3-144, gnl|dasNov1|scaffold_10064 (60847-60654)
               

               
               3-144, gnl|echTel1|scaffold_319035 (90769-90959)
               

               
               3-144, gnl|hg17|chr17 (37599831-37600046)
               

               
               3-144, gnl|Hg17|chr17 (37600040-37599887)
               

               
               3-144, gnl|loxAfr1|scaffold_143852 (533-344)
               

               
               3-144, gnl|mm7|chr11 (100879803-100879999)
               

               
               3-144, gnl|Mm7|chr11 (100879993-100879874)
               

               
               3-144, gnl|monDom2|scaffold_18 (52557902-52558130)
               

               
               3-144, gnl|panTro1|chr19 (40802254-40802469)
               

               
               3-144, gnl|rheMac2|chr16 (52302830-52303045)
               

               
               3-144, gnl|rn3|chr10 (89721680-89721885)
               


               
               148-828, gnl|bosTau2|chr19 (36703283-36702607)
               

               
               148-828, gnl|Hg17|chr17 (37599833-37598880)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-144, gnl|bosTau2|chr19 (36703450-36703307)
               

               
               3-144, gnl|canFam2|chr9 (24041774-24041568)
               

               
               3-144, gnl|dasNov1|scaffold_10064 (60847-60654)
               

               
               3-144, gnl|echTel1|scaffold_319035 (90769-90959)
               

               
               3-144, gnl|hg17|chr17 (37599831-37600046)
               

               
               3-144, gnl|Hg17|chr17 (37600040-37599887)
               

               
               3-144, gnl|loxAfr1|scaffold_143852 (533-344)
               

               
               3-144, gnl|mm7|chr11 (100879803-100879999)
               

               
               3-144, gnl|Mm7|chr11 (100879993-100879874)
               

               
               3-144, gnl|monDom2|scaffold_18 (52557902-52558130)
               

               
               3-144, gnl|panTro1|chr19 (40802254-40802469)
               

               
               3-144, gnl|rheMac2|chr16 (52302830-52303045)
               

               
               3-144, gnl|rn3|chr10 (89721680-89721885)
               


               
               148-828, gnl|bosTau2|chr19 (36703283-36702607)
               

               
               148-828, gnl|Hg17|chr17 (37599833-37598880)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	346-462, - strand, RNAz p=0.78698
	543-782, - strand, RNAz p=0.999743

	643-781, - strand, RNAmicro p=0.998878
	650-738, + strand, RNAmicro p=0.997198

	3-144, gnl\|bosTau2\|chr19 (36703450-36703307)
	3-144, gnl\|canFam2\|chr9 (24041774-24041568)
	3-144, gnl\|dasNov1\|scaffold_10064 (60847-60654)
	3-144, gnl\|echTel1\|scaffold_319035 (90769-90959)
	3-144, gnl\|hg17\|chr17 (37599831-37600046)
	3-144, gnl\|Hg17\|chr17 (37600040-37599887)
	3-144, gnl\|loxAfr1\|scaffold_143852 (533-344)
	3-144, gnl\|mm7\|chr11 (100879803-100879999)
	3-144, gnl\|Mm7\|chr11 (100879993-100879874)
	3-144, gnl\|monDom2\|scaffold_18 (52557902-52558130)
	3-144, gnl\|panTro1\|chr19 (40802254-40802469)
	3-144, gnl\|rheMac2\|chr16 (52302830-52303045)
	3-144, gnl\|rn3\|chr10 (89721680-89721885)

	148-828, gnl\|bosTau2\|chr19 (36703283-36702607)
	148-828, gnl\|Hg17\|chr17 (37599833-37598880)