Non-Coding RNA Search

Ss1.1-rpigcb_16228.5

Sequence:


               
               GGAACAACCCCCGGAAAGGGGAAAGGTCCCATCCTGCACTACAATCATTTTGACAATTTC
CTCTCGCACTTTGTAATCCAAGTCAGAGCTATACACTAACTTGTACATATGCAGTCCTGG
GTAAGTTTGGGTTATAAATGACCTATTTCCCTCCAAATTATTTTATTTCACTCATTATCC
CAGTGCCTCGTGTATGTGCACTGGGAAAGGTAGTACTTCTAATATGAAGAGCAGGAGAAA
TGAGAGAGCTATAATGTTTCTTGAAATAAATAATATAATTGTCCTTGTTACTTGTATTAT
GAGGACAGAACATATTCTGATAAGAAGAAAGAACGTGGTGCTTTGCTTACTGTTTAAAGA
AAATTTGTAAAACTAAAGACTTTTGTGTGGGGGGGAAAGCTATCTTGAATGCTTTTTCTT
AATTTACATTTCTCCCAGCTGTAGCATCTTTGAAGTATTGGAGTGTTTCCCATAAAGCAG
AGCTCCATTCAGAGCCGTCTTGAAGGTTATTTATTCATGTCACGTATGGTAGAATAGGAC
TAGTTAGAGGGTGGCACCTGGTCCTGAGGCTGCGGAAACTCTCTGGTTTTCCTAATGGAC
GCACTCTATGCTTTTAAGAACCACGAAGATTCAGTAAGGAAATGTTTTTTGAAACTATAG
AAGATTTAAAAAGAACGCTGCTGTCCCACACAAATCCTGTTTAAAGGAATTTTAAAGAGA
TACATTTTACTATATCAAAGAACATACCTGTATTTGCCTAAACACCCTATATAACTTTGT
AATGATAAAACTTCTCCCTTTGATGGCGAAGCTTATTCCTATTAAACCTAGACTGTGTTC
TTCTTTTTTTTTTTTTTTTTTTTTTCTCCTTCGTCTGATCCTGAATTTGTGAACTCTCTC
TTTGGTATATCTTTTATTAAACTGCACTGTTTGTTTAGTCAAGGTAAACAAGTCCTTCTG
TATCCGAATAACTTGGCGTGTCTCGCGTGTTGTGATGTGAGAAGCATTGTGATCTTTCTA
CACTAATGACGTGCAAATAAAATTTTGTATTTATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACAACCCCCGGAAAGGGGAAAGGTCCCATCCTGCACTACAATCATTTTGACAATTTC
CTCTCGCACTTTGTAATCCAAGTCAGAGCTATACACTAACTTGTACATATGCAGTCCTGG
GTAAGTTTGGGTTATAAATGACCTATTTCCCTCCAAATTATTTTATTTCACTCATTATCC
CAGTGCCTCGTGTATGTGCACTGGGAAAGGTAGTACTTCTAATATGAAGAGCAGGAGAAA
TGAGAGAGCTATAATGTTTCTTGAAATAAATAATATAATTGTCCTTGTTACTTGTATTAT
GAGGACAGAACATATTCTGATAAGAAGAAAGAACGTGGTGCTTTGCTTACTGTTTAAAGA
AAATTTGTAAAACTAAAGACTTTTGTGTGGGGGGGAAAGCTATCTTGAATGCTTTTTCTT
AATTTACATTTCTCCCAGCTGTAGCATCTTTGAAGTATTGGAGTGTTTCCCATAAAGCAG
AGCTCCATTCAGAGCCGTCTTGAAGGTTATTTATTCATGTCACGTATGGTAGAATAGGAC
TAGTTAGAGGGTGGCACCTGGTCCTGAGGCTGCGGAAACTCTCTGGTTTTCCTAATGGAC
GCACTCTATGCTTTTAAGAACCACGAAGATTCAGTAAGGAAATGTTTTTTGAAACTATAG
AAGATTTAAAAAGAACGCTGCTGTCCCACACAAATCCTGTTTAAAGGAATTTTAAAGAGA
TACATTTTACTATATCAAAGAACATACCTGTATTTGCCTAAACACCCTATATAACTTTGT
AATGATAAAACTTCTCCCTTTGATGGCGAAGCTTATTCCTATTAAACCTAGACTGTGTTC
TTCTTTTTTTTTTTTTTTTTTTTTTCTCCTTCGTCTGATCCTGAATTTGTGAACTCTCTC
TTTGGTATATCTTTTATTAAACTGCACTGTTTGTTTAGTCAAGGTAAACAAGTCCTTCTG
TATCCGAATAACTTGGCGTGTCTCGCGTGTTGTGATGTGAGAAGCATTGTGATCTTTCTA
CACTAATGACGTGCAAATAAAATTTTGTATTTATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               156-275, + strand, RNAz p=0.999244

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-275, + strand, RNAz p=0.999244

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               156-275, BY799497 Homo sapiens eye Homo sapiens cDNA clone HE4556.seq 5', 
(dbj|BY799497.2|), blast E-value=8e-18, identity=85.83% 
               

               
               156-275, ai75f09.s1 Soares_testis_NHT Homo sapiens cDNA clone 1376681 3' 
(gb|AA824235.1|), blast E-value=8e-18, identity=85.83% 
               

               
               156-275, 602131648F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE (gb|BF574430.1|), 
blast E-value=8e-18, identity=85.83% 
               

               
               156-275, UI-1-BB1p-auk-b-05-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone 
(gb|BQ024519.1|), blast E-value=8e-18, identity=85.83% 
               

               
               156-275, AGENCOURT_7836838 NIH_MGC_82 Homo sapiens cDNA clone IMAGE 
(gb|BQ438719.1|), blast E-value=8e-18, identity=85.83% 
               

               
               156-275, UI-1-BB1p-auw-c-02-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone 
(gb|BU754385.1|), blast E-value=8e-18, identity=85.83%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               156-275, BY799497 Homo sapiens eye Homo sapiens cDNA clone HE4556.seq 5', 
(dbj|BY799497.2|), blast E-value=8e-18, identity=85.83% 
               

               
               156-275, ai75f09.s1 Soares_testis_NHT Homo sapiens cDNA clone 1376681 3' 
(gb|AA824235.1|), blast E-value=8e-18, identity=85.83% 
               

               
               156-275, 602131648F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE (gb|BF574430.1|), 
blast E-value=8e-18, identity=85.83% 
               

               
               156-275, UI-1-BB1p-auk-b-05-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone 
(gb|BQ024519.1|), blast E-value=8e-18, identity=85.83% 
               

               
               156-275, AGENCOURT_7836838 NIH_MGC_82 Homo sapiens cDNA clone IMAGE 
(gb|BQ438719.1|), blast E-value=8e-18, identity=85.83% 
               

               
               156-275, UI-1-BB1p-auw-c-02-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone 
(gb|BU754385.1|), blast E-value=8e-18, identity=85.83%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-1056, gnl|bosTau2|chr24 (28533053-28534089)
               

               
               11-1056, gnl|Hg17|chr18 (8628293-8629376)
               

               
               11-1056, gnl|Mm7|chr17 (64769085-64767944)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-1056, gnl|bosTau2|chr24 (28533053-28534089)
               

               
               11-1056, gnl|Hg17|chr18 (8628293-8629376)
               

               
               11-1056, gnl|Mm7|chr17 (64769085-64767944)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               pro (0.512033)
               

               
               amn (0.417711)
               

               
               sme (0.305437)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               amn (0.417711)
               

               
               sme (0.305437)
               

               
               cty (0.20816)
               

               
               tes (0.207814)
               

               
               sin (0.174948)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	156-275, BY799497 Homo sapiens eye Homo sapiens cDNA clone HE4556.seq 5', (dbj\|BY799497.2\|), blast E-value=8e-18, identity=85.83%
	156-275, ai75f09.s1 Soares_testis_NHT Homo sapiens cDNA clone 1376681 3' (gb\|AA824235.1\|), blast E-value=8e-18, identity=85.83%
	156-275, 602131648F1 NIH_MGC_81 Homo sapiens cDNA clone IMAGE (gb\|BF574430.1\|), blast E-value=8e-18, identity=85.83%
	156-275, UI-1-BB1p-auk-b-05-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone (gb\|BQ024519.1\|), blast E-value=8e-18, identity=85.83%
	156-275, AGENCOURT_7836838 NIH_MGC_82 Homo sapiens cDNA clone IMAGE (gb\|BQ438719.1\|), blast E-value=8e-18, identity=85.83%
	156-275, UI-1-BB1p-auw-c-02-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone (gb\|BU754385.1\|), blast E-value=8e-18, identity=85.83%

	11-1056, gnl\|bosTau2\|chr24 (28533053-28534089)
	11-1056, gnl\|Hg17\|chr18 (8628293-8629376)
	11-1056, gnl\|Mm7\|chr17 (64769085-64767944)

	pro (0.512033)
	amn (0.417711)
	sme (0.305437)
	cty (0.20816)
	tes (0.207814)
	sin (0.174948)
	tbr (0.154178)
	hyp (0.142837)
	lnt (0.142308)
	hlv (0.139256)
	lyg (0.133103)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)