Non-Coding RNA Search

Ss1.1-rpigcb_16441.5

Sequence:


               
               GTGTACCAGGTGGTGTGCTTAGATACTCTGTATACATTAGTGTTTATCCTCACAAATTAG
GTGTTATTCCCATATTATAGATGAGAAAATTGAGGCTCAGAGAACTAAAGTCATTTTCCA
CTGTCACAGAGCTAGTAAGTAACGGAGCTAAGATTTATTATACTCCAAGCCTATGTATTT
TTGGTACTATGTCAGCATTGATGTTAGTCATTTAGCATTATTTCCATTTTTATTTAATGA
CATGTGACATCTAATACATTGGCCAGTAATAATCAAATTAGCCAGCTAAATTGTCCTTGT
GGTTCTTACACTCTTGCCTGGGAGCTTGTTAAAATGGAGATTTCAAGACCTCAATCCCAG
AAATTCTGATTCTGTCATGGGATCCAGGAGTATGCTTTCTTGGCAATGGTTCTCAAAGTG
TAGTCCCAACCAGCAGCATCAGCATCACCTGGGATCTGTTGGTCCTCTCCTAGGCTTCAC
CCCAGACCTACCAAATCTGAAACTCAGATGGTGTAGAGGCTAGTGATTATGTTTAAACAA
GGCTTCCAGGTGAGTCTTATTCAGCCTTCCTCTAAAACCGGGTAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTACCAGGTGGTGTGCTTAGATACTCTGTATACATTAGTGTTTATCCTCACAAATTAG
GTGTTATTCCCATATTATAGATGAGAAAATTGAGGCTCAGAGAACTAAAGTCATTTTCCA
CTGTCACAGAGCTAGTAAGTAACGGAGCTAAGATTTATTATACTCCAAGCCTATGTATTT
TTGGTACTATGTCAGCATTGATGTTAGTCATTTAGCATTATTTCCATTTTTATTTAATGA
CATGTGACATCTAATACATTGGCCAGTAATAATCAAATTAGCCAGCTAAATTGTCCTTGT
GGTTCTTACACTCTTGCCTGGGAGCTTGTTAAAATGGAGATTTCAAGACCTCAATCCCAG
AAATTCTGATTCTGTCATGGGATCCAGGAGTATGCTTTCTTGGCAATGGTTCTCAAAGTG
TAGTCCCAACCAGCAGCATCAGCATCACCTGGGATCTGTTGGTCCTCTCCTAGGCTTCAC
CCCAGACCTACCAAATCTGAAACTCAGATGGTGTAGAGGCTAGTGATTATGTTTAAACAA
GGCTTCCAGGTGAGTCTTATTCAGCCTTCCTCTAAAACCGGGTAATTC

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               40-548, gnl|bosTau2|chr4 (3933576-3933042)
               

               
               40-548, gnl|canFam2|chr14 (25848352-25849416)
               

               
               40-548, gnl|dasNov1|scaffold_48910 (8265-7255)
               

               
               40-548, gnl|hg17|chr7 (7058987-7060032)
               

               
               40-548, gnl|Hg17|chr7 (7059033-7059620)
               

               
               40-548, gnl|loxAfr1|scaffold_1797 (63886-64933)
               

               
               40-548, gnl|mm7|chr6 (7831095-7832094)
               

               
               40-548, gnl|Mm7|chr6 (7831135-7831647)
               

               
               40-548, gnl|oryCun1|scaffold_188670 (12527-11510)
               

               
               40-548, gnl|panTro1|chr6 (7524113-7525165)
               

               
               40-548, gnl|rheMac2|chr3 (119139966-119138939)
               

               
               40-548, gnl|rn3|chr4 (33054391-33055398)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-548, gnl|bosTau2|chr4 (3933576-3933042)
               

               
               40-548, gnl|canFam2|chr14 (25848352-25849416)
               

               
               40-548, gnl|dasNov1|scaffold_48910 (8265-7255)
               

               
               40-548, gnl|hg17|chr7 (7058987-7060032)
               

               
               40-548, gnl|Hg17|chr7 (7059033-7059620)
               

               
               40-548, gnl|loxAfr1|scaffold_1797 (63886-64933)
               

               
               40-548, gnl|mm7|chr6 (7831095-7832094)
               

               
               40-548, gnl|Mm7|chr6 (7831135-7831647)
               

               
               40-548, gnl|oryCun1|scaffold_188670 (12527-11510)
               

               
               40-548, gnl|panTro1|chr6 (7524113-7525165)
               

               
               40-548, gnl|rheMac2|chr3 (119139966-119138939)
               

               
               40-548, gnl|rn3|chr4 (33054391-33055398)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.20816)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	40-548, gnl\|bosTau2\|chr4 (3933576-3933042)
	40-548, gnl\|canFam2\|chr14 (25848352-25849416)
	40-548, gnl\|dasNov1\|scaffold_48910 (8265-7255)
	40-548, gnl\|hg17\|chr7 (7058987-7060032)
	40-548, gnl\|Hg17\|chr7 (7059033-7059620)
	40-548, gnl\|loxAfr1\|scaffold_1797 (63886-64933)
	40-548, gnl\|mm7\|chr6 (7831095-7832094)
	40-548, gnl\|Mm7\|chr6 (7831135-7831647)
	40-548, gnl\|oryCun1\|scaffold_188670 (12527-11510)
	40-548, gnl\|panTro1\|chr6 (7524113-7525165)
	40-548, gnl\|rheMac2\|chr3 (119139966-119138939)
	40-548, gnl\|rn3\|chr4 (33054391-33055398)