Ss1.1-rpigcb_16583.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATGGAGAGGGCTCCTTCTCCTCTGCGGGACGTGGAGAGAGTGGCCAGGACCGACGAGAG GACGTTGGTCCCTGCCGCTTCCCGAAAAGACTTCCGGGTGCGCTGCACCTCGAAGCGGGC GGTGATGGAAATGCTAGAACTGTGCGGCAGCTTCGTGCAAAAACTCGGGGACGCGCTGCC AGAGGAGATTCGCGAGCCCGTGCTGCGAGATGCGCAGTGGACTTTCGAGTCAGCTGTGCA AGAGAATGTCAGCATCAATGGGCAGGCGTGGCAGGAAGCTTCAGACAGTTGCTTTATGGA TTCTGATATAAAAGTACTTGAAGACCAGTTTGATGAAATCATAGTTGATGTAGCCACAAA ACGTAAGCAGTATCCCAGGAAGATCCTTGAATGTGTCATCAAAATCATAAAAGCAAAACA AGAAGTTCTGAAGCAGTACCACCCTGTTGTACATCCATTAGGCCTAAAATATGATCCCGA TCCAGCCCCTCGTATGGAAAACTTAAAATGCAGAGGAGAAGCAATAGCTGAGGGTATCAG TGAAGCCATGAAGTCCTTGCCTGCCTTAATTGAACAAGGAGATGGATTTTCCCAAGTTTT AAAGATGCAGCCTATCATCCAGCTCCAGAGAGTCCACCAAGAAGTCTTTTCTGGTTGTTG TAGGAAACCCGATGTTAAACCTGAGAGCTTTATAGCACAAATAGAAACCACACCAGCAGA GACTTCTACTAGGAAAAGCACTGACTTGGTACTGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATGGAGAGGGCTCCTTCTCCTCTGCGGGACGTGGAGAGAGTGGCCAGGACCGACGAGAG GACGTTGGTCCCTGCCGCTTCCCGAAAAGACTTCCGGGTGCGCTGCACCTCGAAGCGGGC GGTGATGGAAATGCTAGAACTGTGCGGCAGCTTCGTGCAAAAACTCGGGGACGCGCTGCC AGAGGAGATTCGCGAGCCCGTGCTGCGAGATGCGCAGTGGACTTTCGAGTCAGCTGTGCA AGAGAATGTCAGCATCAATGGGCAGGCGTGGCAGGAAGCTTCAGACAGTTGCTTTATGGA TTCTGATATAAAAGTACTTGAAGACCAGTTTGATGAAATCATAGTTGATGTAGCCACAAA ACGTAAGCAGTATCCCAGGAAGATCCTTGAATGTGTCATCAAAATCATAAAAGCAAAACA AGAAGTTCTGAAGCAGTACCACCCTGTTGTACATCCATTAGGCCTAAAATATGATCCCGA TCCAGCCCCTCGTATGGAAAACTTAAAATGCAGAGGAGAAGCAATAGCTGAGGGTATCAG TGAAGCCATGAAGTCCTTGCCTGCCTTAATTGAACAAGGAGATGGATTTTCCCAAGTTTT AAAGATGCAGCCTATCATCCAGCTCCAGAGAGTCCACCAAGAAGTCTTTTCTGGTTGTTG TAGGAAACCCGATGTTAAACCTGAGAGCTTTATAGCACAAATAGAAACCACACCAGCAGA GACTTCTACTAGGAAAAGCACTGACTTGGTACTGAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 10-220, gnl|bosTau2|chr16 (52833213-52833423) | |
| 10-220, gnl|canFam2|chr7 (13890203-13890614) | |
| 10-220, gnl|dasNov1|scaffold_14863 (43281-42876) | |
| 10-220, gnl|echTel1|scaffold_281660 (82159-82570) | |
| 10-220, gnl|hg17|chr1 (209353259-209353676) | |
| 10-220, gnl|Hg17|chr1 (209353477-209353267) | |
| 10-220, gnl|loxAfr1|scaffold_5698 (55399-54923) | |
| 10-220, gnl|mm7|chr1 (190616788-190616357) | |
| 10-220, gnl|Mm7|chr1 (190616568-190616778) | |
| 10-220, gnl|monDom2|scaffold_13 (16837877-16838295) | |
| 10-220, gnl|oryCun1|scaffold_209279 (43966-44387) | |
| 10-220, gnl|panTro1|chr1 (192998097-192998514) | |
| 10-220, gnl|rheMac2|chr1 (157635918-157635501) | |
| 10-220, gnl|rn3|chr13_random (577132-576705) | |
| 296-430, gnl|bosTau2|chr16 (52848094-52848228) | |
| 296-430, gnl|canFam2|chr7 (13881205-13881288) | |
| 296-430, gnl|dasNov1|scaffold_164996 (2850-2788) | |
| 296-430, gnl|echTel1|scaffold_282604 (14579-14662) | |
| 296-430, gnl|hg17|chr1 (209346101-209346184) | |
| 296-430, gnl|Hg17|chr1 (209346234-209346100) | |
| 296-430, gnl|mm7|chr1 (190623627-190623544) | |
| 296-430, gnl|Mm7|chr1 (190623492-190623626) | |
| 296-430, gnl|monDom2|scaffold_13 (16829342-16829425) | |
| 296-430, gnl|oryCun1|scaffold_79864 (876-958) | |
| 296-430, gnl|panTro1|chr1 (192991003-192991086) | |
| 296-430, gnl|rheMac2|chr1 (157643934-157643851) | |
| 296-430, gnl|rn3|chr13_random (583149-583066) | |
| 513-756, gnl|bosTau2|chr16 (52865760-52866003) | |
| 513-756, gnl|canFam2|chr7 (13855308-13855659) | |
| 513-756, gnl|dasNov1|scaffold_164996 (3332-2975) | |
| 513-756, gnl|echTel1|scaffold_281660 (48217-48566) | |
| 513-756, gnl|galGal2|chr3 (18153580-18153227) | |
| 513-756, gnl|hg17|chr1 (209300061-209300427) | |
| 513-756, gnl|loxAfr1|scaffold_5698 (83138-82786) | |
| 513-756, gnl|mm7|chr1 (190636030-190635675) | |
| 513-756, gnl|monDom2|scaffold_13 (16810774-16811125) | |
| 513-756, gnl|oryCun1|scaffold_209279 (7376-7738) | |
| 513-756, gnl|panTro1|chr1 (192943694-192944060) | |
| 513-756, gnl|rheMac2|chr1 (157677963-157677597) | |
| 513-756, gnl|rn3|chr13 (107300060-107299705) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 10-220, gnl|bosTau2|chr16 (52833213-52833423) | |
| 10-220, gnl|canFam2|chr7 (13890203-13890614) | |
| 10-220, gnl|dasNov1|scaffold_14863 (43281-42876) | |
| 10-220, gnl|echTel1|scaffold_281660 (82159-82570) | |
| 10-220, gnl|hg17|chr1 (209353259-209353676) | |
| 10-220, gnl|Hg17|chr1 (209353477-209353267) | |
| 10-220, gnl|loxAfr1|scaffold_5698 (55399-54923) | |
| 10-220, gnl|mm7|chr1 (190616788-190616357) | |
| 10-220, gnl|Mm7|chr1 (190616568-190616778) | |
| 10-220, gnl|monDom2|scaffold_13 (16837877-16838295) | |
| 10-220, gnl|oryCun1|scaffold_209279 (43966-44387) | |
| 10-220, gnl|panTro1|chr1 (192998097-192998514) | |
| 10-220, gnl|rheMac2|chr1 (157635918-157635501) | |
| 10-220, gnl|rn3|chr13_random (577132-576705) | |
| 296-430, gnl|bosTau2|chr16 (52848094-52848228) | |
| 296-430, gnl|canFam2|chr7 (13881205-13881288) | |
| 296-430, gnl|dasNov1|scaffold_164996 (2850-2788) | |
| 296-430, gnl|echTel1|scaffold_282604 (14579-14662) | |
| 296-430, gnl|hg17|chr1 (209346101-209346184) | |
| 296-430, gnl|Hg17|chr1 (209346234-209346100) | |
| 296-430, gnl|mm7|chr1 (190623627-190623544) | |
| 296-430, gnl|Mm7|chr1 (190623492-190623626) | |
| 296-430, gnl|monDom2|scaffold_13 (16829342-16829425) | |
| 296-430, gnl|oryCun1|scaffold_79864 (876-958) | |
| 296-430, gnl|panTro1|chr1 (192991003-192991086) | |
| 296-430, gnl|rheMac2|chr1 (157643934-157643851) | |
| 296-430, gnl|rn3|chr13_random (583149-583066) | |
| 513-756, gnl|bosTau2|chr16 (52865760-52866003) | |
| 513-756, gnl|canFam2|chr7 (13855308-13855659) | |
| 513-756, gnl|dasNov1|scaffold_164996 (3332-2975) | |
| 513-756, gnl|echTel1|scaffold_281660 (48217-48566) | |
| 513-756, gnl|galGal2|chr3 (18153580-18153227) | |
| 513-756, gnl|hg17|chr1 (209300061-209300427) | |
| 513-756, gnl|loxAfr1|scaffold_5698 (83138-82786) | |
| 513-756, gnl|mm7|chr1 (190636030-190635675) | |
| 513-756, gnl|monDom2|scaffold_13 (16810774-16811125) | |
| 513-756, gnl|oryCun1|scaffold_209279 (7376-7738) | |
| 513-756, gnl|panTro1|chr1 (192943694-192944060) | |
| 513-756, gnl|rheMac2|chr1 (157677963-157677597) | |
| 513-756, gnl|rn3|chr13 (107300060-107299705) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| eep (0.122564) | |
| clu (0.119646) |