Non-Coding RNA Search

Ss1.1-rpigcb_16659.5

Sequence:


               
               CTCCACCGCCAGCAACGATTCTTGTGCAGTGAATCACTTCCAGAAATGAATAGCCACAGT
TTTTTGGAATGAATGTTGTGAAATCCCTCGTTTATAATGGCAGGTTTTCCGTTGGTGGTT
TTTATCAGAGAGAATTTCTCAAGATCAAAACGAAACCTCCTCTTTACAAAGAAAGAAAGT
ACTCTCGATACAGAAAGCAAAAGTATTTCCACTCTCCTCCTGACAAGCTGTCACAGAAGA
TCTCTGTACCTGTGTTTAGAGATCCACGTCCATGTACTTGCCTGAACGCACGAGTCCTTG
AAATCACGAGTTCATTGCCGTAACTGGTGGTCTCCTATGCAGCAGGTTGCTAACTCCGAG
CAGTGTTATGTGCGGTGAGTAGGTGGTAGACTCCGAAGATCATTGCTAATCCAGTGTTCG
TCCTCTTGAGTCATGGATTCAGAGGACTGCCAGCAAGCTCTTAAATACTTGCTGTGCCTT
ATATGATTTAATGCATGGAGCTGCAAGACTCCCAGAAGCCTGTGAAAGGTTTTGCAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCACCGCCAGCAACGATTCTTGTGCAGTGAATCACTTCCAGAAATGAATAGCCACAGT
TTTTTGGAATGAATGTTGTGAAATCCCTCGTTTATAATGGCAGGTTTTCCGTTGGTGGTT
TTTATCAGAGAGAATTTCTCAAGATCAAAACGAAACCTCCTCTTTACAAAGAAAGAAAGT
ACTCTCGATACAGAAAGCAAAAGTATTTCCACTCTCCTCCTGACAAGCTGTCACAGAAGA
TCTCTGTACCTGTGTTTAGAGATCCACGTCCATGTACTTGCCTGAACGCACGAGTCCTTG
AAATCACGAGTTCATTGCCGTAACTGGTGGTCTCCTATGCAGCAGGTTGCTAACTCCGAG
CAGTGTTATGTGCGGTGAGTAGGTGGTAGACTCCGAAGATCATTGCTAATCCAGTGTTCG
TCCTCTTGAGTCATGGATTCAGAGGACTGCCAGCAAGCTCTTAAATACTTGCTGTGCCTT
ATATGATTTAATGCATGGAGCTGCAAGACTCCCAGAAGCCTGTGAAAGGTTTTGCAGAGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-538, gnl|bosTau2|chr4 (51127869-51127326)
               

               
               1-538, gnl|Hg17|chr7 (130055334-130054803)
               

               
               1-538, gnl|Mm7|chr6 (31018967-31018450)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-538, gnl|bosTau2|chr4 (51127869-51127326)
               

               
               1-538, gnl|Hg17|chr7 (130055334-130054803)
               

               
               1-538, gnl|Mm7|chr6 (31018967-31018450)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.267344)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               cty (0.10408)

	1-538, gnl\|bosTau2\|chr4 (51127869-51127326)
	1-538, gnl\|Hg17\|chr7 (130055334-130054803)
	1-538, gnl\|Mm7\|chr6 (31018967-31018450)