Non-Coding RNA Search

Ss1.1-rpigcb_16675.5

Sequence:


               
               GAAAGCGAAAGCCCAGGCTGCGAGCGGGGAGACCTGGAGATCTAGCAGCAACTGGAGCAG
CATGGCCAAGCCTTGTGGGGTGCGCCTGAGCGGGGAAGCCCGCAAACAGGTGGATGTCTT
CAGGCAAAATCTTTTCCAGGAGGTAAGTCTTCTGGATTCAAGTGATTTGACGCAGAATCT
CAGACCAATTCCTGAGCATTGCAACTTCCCAGACCCCTAAACCCACCCTCGACCCAGGCC
CTACTTCCCTTATCAACCTTCACCCAAGATAAGCTCCTAGTTACTAATCTCTTCTTTTAC
TTTGACCCCTCTTAATACCTTCCCCACTTATGCCACTTCCTCTCCCATCTTTCGGTGTGA
AGGGAAAAGCTGTAGCCCCAAAGCGGGAATACCACAGTTCTAACCTTGGTTCTACCACTT
CCCAGCTTGCTCCCTTCACTTTTCAGGGATTCAGTTTCCTCATTTGTAAGTATTGGATTC
AAAGATTTCCAAGGGCCCTTCCAGTCCCACTCCTCAGACTTCTCACTGAGTGTCTTCTGT
GATTCTTACCCTTGAAACATAACCCGCAGGCTGAGGAATTCCTCTACAGATTTTTGCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGCGAAAGCCCAGGCTGCGAGCGGGGAGACCTGGAGATCTAGCAGCAACTGGAGCAG
CATGGCCAAGCCTTGTGGGGTGCGCCTGAGCGGGGAAGCCCGCAAACAGGTGGATGTCTT
CAGGCAAAATCTTTTCCAGGAGGTAAGTCTTCTGGATTCAAGTGATTTGACGCAGAATCT
CAGACCAATTCCTGAGCATTGCAACTTCCCAGACCCCTAAACCCACCCTCGACCCAGGCC
CTACTTCCCTTATCAACCTTCACCCAAGATAAGCTCCTAGTTACTAATCTCTTCTTTTAC
TTTGACCCCTCTTAATACCTTCCCCACTTATGCCACTTCCTCTCCCATCTTTCGGTGTGA
AGGGAAAAGCTGTAGCCCCAAAGCGGGAATACCACAGTTCTAACCTTGGTTCTACCACTT
CCCAGCTTGCTCCCTTCACTTTTCAGGGATTCAGTTTCCTCATTTGTAAGTATTGGATTC
AAAGATTTCCAAGGGCCCTTCCAGTCCCACTCCTCAGACTTCTCACTGAGTGTCTTCTGT
GATTCTTACCCTTGAAACATAACCCGCAGGCTGAGGAATTCCTCTACAGATTTTTGCCTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               107-600, gnl|bosTau2|chr10 (12363265-12363767)
               

               
               107-600, gnl|Hg17|chr14 (23685292-23684791)
               

               
               107-600, gnl|Mm7|chr14 (50457878-50457413)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               107-600, gnl|bosTau2|chr10 (12363265-12363767)
               

               
               107-600, gnl|Hg17|chr14 (23685292-23684791)
               

               
               107-600, gnl|Mm7|chr14 (50457878-50457413)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.31224)
               

               
               pty (0.142714)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               pty (0.142714)

	107-600, gnl\|bosTau2\|chr10 (12363265-12363767)
	107-600, gnl\|Hg17\|chr14 (23685292-23684791)
	107-600, gnl\|Mm7\|chr14 (50457878-50457413)