Non-Coding RNA Search

Ss1.1-rpigcb_16871.5

Sequence:


               
               GCACACTCAGCCTTGGGCAAGGACCCGGAGACCCCTGGTGCTGAGCTGAGAGGCTGAAAT
TCTACGGAAGCATTAGAGAAGGGCCAACCAAAGCCATGATATTTCCATGGAAATGTCACA
GTGCTCAGAGGGGCTTATGGAATGTCTTCAAGTTGTGGGTCCTGACTATGCTTTGTTGTG
ATTTTTTTGCATATCATGGAACTGATTGCTGGACTTACCACTATTCTGAAAAACCCATGA
ACTGGATGAAGGCTAGGAAGTTCTGTCAAGAAAATTACACAGATTTGGTTGCCATACAAA
ACAAGGGGGAGATTGAATACCTGAATAAGACGCTTCCCTTCAGTCGTAGTTACTACTGGA
TAGGAATCCGGAAGGTGGAAGGGGTATGGACTTGGGTGGGAACCAACAAATCTCTCACCG
AAGAGGCGGAAAACTGGGGCGATGGGGAGCCCAACAACAGGAAGACTAAGGAGGACTGTG
TGGAGATCTACATCAAAAGGAGCAAAGACTCCGGGAAGTGGAATGATGATGCCTGCCACA
AAGCCAAGAGAGCCCTCTGTTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACACTCAGCCTTGGGCAAGGACCCGGAGACCCCTGGTGCTGAGCTGAGAGGCTGAAAT
TCTACGGAAGCATTAGAGAAGGGCCAACCAAAGCCATGATATTTCCATGGAAATGTCACA
GTGCTCAGAGGGGCTTATGGAATGTCTTCAAGTTGTGGGTCCTGACTATGCTTTGTTGTG
ATTTTTTTGCATATCATGGAACTGATTGCTGGACTTACCACTATTCTGAAAAACCCATGA
ACTGGATGAAGGCTAGGAAGTTCTGTCAAGAAAATTACACAGATTTGGTTGCCATACAAA
ACAAGGGGGAGATTGAATACCTGAATAAGACGCTTCCCTTCAGTCGTAGTTACTACTGGA
TAGGAATCCGGAAGGTGGAAGGGGTATGGACTTGGGTGGGAACCAACAAATCTCTCACCG
AAGAGGCGGAAAACTGGGGCGATGGGGAGCCCAACAACAGGAAGACTAAGGAGGACTGTG
TGGAGATCTACATCAAAAGGAGCAAAGACTCCGGGAAGTGGAATGATGATGCCTGCCACA
AAGCCAAGAGAGCCCTCTGTTACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|88097|pir||S09702

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|88097|pir||S09702

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               180-564, gnl|bosTau2|chr16 (20350724-20350340)
               

               
               180-564, gnl|Hg17|chr1 (166409603-166409219)
               

               
               180-564, gnl|Mm7|chr1 (164028682-164029066)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-564, gnl|bosTau2|chr16 (20350724-20350340)
               

               
               180-564, gnl|Hg17|chr1 (166409603-166409219)
               

               
               180-564, gnl|Mm7|chr1 (164028682-164029066)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fty (0.17584)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	180-564, gnl\|bosTau2\|chr16 (20350724-20350340)
	180-564, gnl\|Hg17\|chr1 (166409603-166409219)
	180-564, gnl\|Mm7\|chr1 (164028682-164029066)

	fty (0.17584)
	cly (0.120642)
	clu (0.119646)
	cbl (0.114797)
	cty (0.10408)
	jej (0.0989218)