Ss1.1-rpigcb_16983.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATTTTGAAATGGTTCACCTTCGAAAAGTGCCAAATCAGTACACTCATTTATCAGGTCT GCTGGATATCTTCAAATCAAAGATTGGCTGTCCTTTAACTCCATTGCCTCCAGTTAGTAT TGCTATAAGGTTTACCTATGTACTTCAGGATTGGCAACAGTATTTTTGGCCTCAGCAACC TCCAGATATAGATGCCCTTGTAGGAGGAGAAGTTGGAGGCCTGGAGTTTGGCAAGTTACC GTTTGGTGCCTGTGAAGATCCTATTAGTGAACTCCATTTAGCAACTACATGGCCTCACTT GACTGAAGGTATCATTGTGGACAATGATGTTTGTTCTGATTTGGATCCTCTTCAGGCTCC CCATTGGTCTGTTAGAGTTCGAAAAGCTGATAATCCTCAGTGTTTGCTAGGTGATTTTGT CACTGAATTTTTTAAAATTTGCCGTCGAAAGGAGTCAACTGATGAGATTCTTGGACGATC CACATTTGAGGAAGAAGGGAGAGAAATTGCTGATATATCTCATGCTTTGTCAAAGTTGAC AGAGCCTGCACCGGTTCCAATTCATAAATTATCAGTTTCAAACATGGTACACACTGCGAA GAAGAAAATACGAAAACACAGAGGTGTAGAAGAATCACCACTAAATAATGATGTTCTCAA TACCATTCTCTTGTTCTTATTCCCTGATGCTACTTCTGAGAAACCACTAGATGGGACTTC TTCAACAGATAACAATAATCCTTCATCAGAAAGTGAAGAATATAATCTCTACAGTCAGTT CAAATCTGCACCATCTGATAGTTTAACGTACAAATTGGCGTTATGTCTTTGTATGATCAA TTTCTACCACGGAGGACTAAAAGGAGTGGCACATCTCTGGCAGGAATTTGTTCTTGAAAT GCGTTTCAGATGGGAAAACAACTTTCTGATTCCAGGATTAGCAAGTGGACCCCCAGATCT AAGATGTTGCTTACTTCATCAGAAATTACAGATGTTAAATTGTTGTATTGAAAGAAAGAA GGCACGTGATGAGGGGAGAAAGACAAGTCCTTCAGATAACGTGACTAACACATATTCAGG GGATGCTGGAAAAGCCGGAGACCAGCTGGGCCCAGACAATCTTAAAGATATGGATAAGGA AAAGGGAGAAGTGGGAAAATCATGGGATTCTTGGAGTGACAGTGAAGAAGAATTTTTTGA ATGCCTAAGTGATACTGAAGAACTTAAGGGAAATGGACAAGAGGGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATTTTGAAATGGTTCACCTTCGAAAAGTGCCAAATCAGTACACTCATTTATCAGGTCT GCTGGATATCTTCAAATCAAAGATTGGCTGTCCTTTAACTCCATTGCCTCCAGTTAGTAT TGCTATAAGGTTTACCTATGTACTTCAGGATTGGCAACAGTATTTTTGGCCTCAGCAACC TCCAGATATAGATGCCCTTGTAGGAGGAGAAGTTGGAGGCCTGGAGTTTGGCAAGTTACC GTTTGGTGCCTGTGAAGATCCTATTAGTGAACTCCATTTAGCAACTACATGGCCTCACTT GACTGAAGGTATCATTGTGGACAATGATGTTTGTTCTGATTTGGATCCTCTTCAGGCTCC CCATTGGTCTGTTAGAGTTCGAAAAGCTGATAATCCTCAGTGTTTGCTAGGTGATTTTGT CACTGAATTTTTTAAAATTTGCCGTCGAAAGGAGTCAACTGATGAGATTCTTGGACGATC CACATTTGAGGAAGAAGGGAGAGAAATTGCTGATATATCTCATGCTTTGTCAAAGTTGAC AGAGCCTGCACCGGTTCCAATTCATAAATTATCAGTTTCAAACATGGTACACACTGCGAA GAAGAAAATACGAAAACACAGAGGTGTAGAAGAATCACCACTAAATAATGATGTTCTCAA TACCATTCTCTTGTTCTTATTCCCTGATGCTACTTCTGAGAAACCACTAGATGGGACTTC TTCAACAGATAACAATAATCCTTCATCAGAAAGTGAAGAATATAATCTCTACAGTCAGTT CAAATCTGCACCATCTGATAGTTTAACGTACAAATTGGCGTTATGTCTTTGTATGATCAA TTTCTACCACGGAGGACTAAAAGGAGTGGCACATCTCTGGCAGGAATTTGTTCTTGAAAT GCGTTTCAGATGGGAAAACAACTTTCTGATTCCAGGATTAGCAAGTGGACCCCCAGATCT AAGATGTTGCTTACTTCATCAGAAATTACAGATGTTAAATTGTTGTATTGAAAGAAAGAA GGCACGTGATGAGGGGAGAAAGACAAGTCCTTCAGATAACGTGACTAACACATATTCAGG GGATGCTGGAAAAGCCGGAGACCAGCTGGGCCCAGACAATCTTAAAGATATGGATAAGGA AAAGGGAGAAGTGGGAAAATCATGGGATTCTTGGAGTGACAGTGAAGAAGAATTTTTTGA ATGCCTAAGTGATACTGAAGAACTTAAGGGAAATGGACAAGAGGGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1064-1173, + strand, RNAz p=0.898419 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1064-1173, + strand, RNAz p=0.898419 |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 502-673, gnl|bosTau2|chr2 (38323334-38323163) | |
| 502-673, gnl|canFam2|chr19 (40941727-40941926) | |
| 502-673, gnl|danRer3|chrNA (238218909-238219078) | |
| 502-673, gnl|dasNov1|scaffold_81107 (3817-4013) | |
| 502-673, gnl|fr1|chrUn (304481885-304482085) | |
| 502-673, gnl|galGal2|chr7 (31190436-31190627) | |
| 502-673, gnl|hg17|chr2 (135721841-135722040) | |
| 502-673, gnl|Hg17|chr2 (135721852-135722023) | |
| 502-673, gnl|loxAfr1|scaffold_4487 (55377-55178) | |
| 502-673, gnl|mm7|chr1 (127805118-127805308) | |
| 502-673, gnl|Mm7|chr1 (127805125-127805293) | |
| 502-673, gnl|monDom2|scaffold_2 (20876351-20876546) | |
| 502-673, gnl|oryCun1|scaffold_84001 (2616-2419) | |
| 502-673, gnl|panTro1|chr13 (24711883-24712082) | |
| 502-673, gnl|rheMac2|chr13 (117027093-117026894) | |
| 502-673, gnl|rn3|chr13 (40630541-40630730) | |
| 502-673, gnl|tetNig1|chrUn_random (51786994-51787185) | |
| 502-673, gnl|xenTro1|scaffold_921 (61588-61402) | |
| 761-936, gnl|bosTau2|chr2 (38319461-38319286) | |
| 761-936, gnl|canFam2|chr19 (40945769-40945964) | |
| 761-936, gnl|danRer3|chrNA (238224512-238224689) | |
| 761-936, gnl|dasNov1|scaffold_114631 (623-818) | |
| 761-936, gnl|fr1|chrUn (304483022-304483212) | |
| 761-936, gnl|galGal2|chr7 (31190983-31191185) | |
| 761-936, gnl|hg17|chr2 (135725143-135725338) | |
| 761-936, gnl|Hg17|chr2 (135725160-135725335) | |
| 761-936, gnl|loxAfr1|scaffold_111745 (4743-4548) | |
| 761-936, gnl|mm7|chr1 (127807781-127807976) | |
| 761-936, gnl|Mm7|chr1 (127807798-127807973) | |
| 761-936, gnl|monDom2|scaffold_2 (20878871-20879064) | |
| 761-936, gnl|oryCun1|scaffold_160587 (1207-1402) | |
| 761-936, gnl|panTro1|chr13 (24715191-24715386) | |
| 761-936, gnl|rheMac2|chr13 (117023833-117023638) | |
| 761-936, gnl|rn3|chr13 (40633336-40633531) | |
| 761-936, gnl|tetNig1|chrUn_random (51787814-51788008) | |
| 761-936, gnl|xenTro1|scaffold_921 (78008-77819) | |
| 990-1248, gnl|bosTau2|chr2 (38317039-38316781) | |
| 990-1248, gnl|canFam2|chr19 (40947629-40947814) | |
| 990-1248, gnl|dasNov1|scaffold_114631 (2484-2680) | |
| 990-1248, gnl|echTel1|scaffold_212155 (3575-3754) | |
| 990-1248, gnl|fr1|chrUn (304485801-304485961) | |
| 990-1248, gnl|galGal2|chr7 (31192074-31192264) | |
| 990-1248, gnl|hg17|chr2 (135726831-135727025) | |
| 990-1248, gnl|Hg17|chr2 (135726864-135727119) | |
| 990-1248, gnl|mm7|chr1 (127810524-127810721) | |
| 990-1248, gnl|Mm7|chr1 (127810557-127810815) | |
| 990-1248, gnl|monDom2|scaffold_2 (20881262-20881443) | |
| 990-1248, gnl|oryCun1|scaffold_160587 (3917-4114) | |
| 990-1248, gnl|panTro1|chr13 (24716880-24717074) | |
| 990-1248, gnl|rheMac2|chr13 (117022153-117021956) | |
| 990-1248, gnl|rn3|chr13 (40635525-40635722) | |
| 990-1248, gnl|xenTro1|scaffold_921 (56442-56274) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 502-673, gnl|bosTau2|chr2 (38323334-38323163) | |
| 502-673, gnl|canFam2|chr19 (40941727-40941926) | |
| 502-673, gnl|danRer3|chrNA (238218909-238219078) | |
| 502-673, gnl|dasNov1|scaffold_81107 (3817-4013) | |
| 502-673, gnl|fr1|chrUn (304481885-304482085) | |
| 502-673, gnl|galGal2|chr7 (31190436-31190627) | |
| 502-673, gnl|hg17|chr2 (135721841-135722040) | |
| 502-673, gnl|Hg17|chr2 (135721852-135722023) | |
| 502-673, gnl|loxAfr1|scaffold_4487 (55377-55178) | |
| 502-673, gnl|mm7|chr1 (127805118-127805308) | |
| 502-673, gnl|Mm7|chr1 (127805125-127805293) | |
| 502-673, gnl|monDom2|scaffold_2 (20876351-20876546) | |
| 502-673, gnl|oryCun1|scaffold_84001 (2616-2419) | |
| 502-673, gnl|panTro1|chr13 (24711883-24712082) | |
| 502-673, gnl|rheMac2|chr13 (117027093-117026894) | |
| 502-673, gnl|rn3|chr13 (40630541-40630730) | |
| 502-673, gnl|tetNig1|chrUn_random (51786994-51787185) | |
| 502-673, gnl|xenTro1|scaffold_921 (61588-61402) | |
| 761-936, gnl|bosTau2|chr2 (38319461-38319286) | |
| 761-936, gnl|canFam2|chr19 (40945769-40945964) | |
| 761-936, gnl|danRer3|chrNA (238224512-238224689) | |
| 761-936, gnl|dasNov1|scaffold_114631 (623-818) | |
| 761-936, gnl|fr1|chrUn (304483022-304483212) | |
| 761-936, gnl|galGal2|chr7 (31190983-31191185) | |
| 761-936, gnl|hg17|chr2 (135725143-135725338) | |
| 761-936, gnl|Hg17|chr2 (135725160-135725335) | |
| 761-936, gnl|loxAfr1|scaffold_111745 (4743-4548) | |
| 761-936, gnl|mm7|chr1 (127807781-127807976) | |
| 761-936, gnl|Mm7|chr1 (127807798-127807973) | |
| 761-936, gnl|monDom2|scaffold_2 (20878871-20879064) | |
| 761-936, gnl|oryCun1|scaffold_160587 (1207-1402) | |
| 761-936, gnl|panTro1|chr13 (24715191-24715386) | |
| 761-936, gnl|rheMac2|chr13 (117023833-117023638) | |
| 761-936, gnl|rn3|chr13 (40633336-40633531) | |
| 761-936, gnl|tetNig1|chrUn_random (51787814-51788008) | |
| 761-936, gnl|xenTro1|scaffold_921 (78008-77819) | |
| 990-1248, gnl|bosTau2|chr2 (38317039-38316781) | |
| 990-1248, gnl|canFam2|chr19 (40947629-40947814) | |
| 990-1248, gnl|dasNov1|scaffold_114631 (2484-2680) | |
| 990-1248, gnl|echTel1|scaffold_212155 (3575-3754) | |
| 990-1248, gnl|fr1|chrUn (304485801-304485961) | |
| 990-1248, gnl|galGal2|chr7 (31192074-31192264) | |
| 990-1248, gnl|hg17|chr2 (135726831-135727025) | |
| 990-1248, gnl|Hg17|chr2 (135726864-135727119) | |
| 990-1248, gnl|mm7|chr1 (127810524-127810721) | |
| 990-1248, gnl|Mm7|chr1 (127810557-127810815) | |
| 990-1248, gnl|monDom2|scaffold_2 (20881262-20881443) | |
| 990-1248, gnl|oryCun1|scaffold_160587 (3917-4114) | |
| 990-1248, gnl|panTro1|chr13 (24716880-24717074) | |
| 990-1248, gnl|rheMac2|chr13 (117022153-117021956) | |
| 990-1248, gnl|rn3|chr13 (40635525-40635722) | |
| 990-1248, gnl|xenTro1|scaffold_921 (56442-56274) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |