Ss1.1-rpigcb_1709.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTTGGGACGGTTGGCTCAGCAGCCACTGTCCCCTCCAGTCAGGCTGAAACCAGCCAGG TGGCAGAAGTCCAGCACCAAGATGACTGAGCGCTTCGACTGTCACCACTGTGAGAACTCC CTCTTCGGCCGGAAGTATGTCCTGCGGGAGGAGCAGCCCTACTGCGTAGGCTGCTTCGAG GCACTCTTCGCCAGCACATGCGAGGAGTGTGGGAAGCTGATTGGATGCGACTGCAAGGAC TTATCCTACAAGGACCGGCACTGGCACGAGGCCTGCTTCCACTGCTCACGATGCAGGAGC TCCCTCGTGGACAAGCCATCTGCTGCCAAGGAGGACCAGGTGCTCTGCACTGACTGCTAC TCGCAGGAGTACTCATCCCGCTGCCAGGAGTGCAGGAAGGCCATCATGCCAGGCACCCGC AAGATGGAATACAAGGGCAGCAGCTGGCACGAGACCTGCTTCACCTGCCACCGCTGCCAG CAGCCCATTGGGACCAAGAGCTTCATCCCTAAGGACGGCCAGAACTTCTGTGTGCCCTGC TATGAGAAGCAGCACGCCTTGCAGTGCATTCAGTGCAAAAAGCCCATCACCAGCGGGGGC GTCACGTACCGTGAGCAGCCCTGGCACAGGGAGTGCTTCGTGTGCACCGCCTGCAAGAAG CCACTGTCCGGCCAGCGCTTCACGTCCCGTGACGAGTTCGCCTACTGCCTGGGCTGCTTC TGCGACCTGTACGCCAAGAAGTGTACAGGCTGCGCCAACCCCATCAGTGGACTGGGCGGC ACCAAGTACATCTCCTTCGAGGAGCGGCAGTGGCACAACGACTGCTTCAACTGCAAGAAG TGCTCGCTGTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTTGGGACGGTTGGCTCAGCAGCCACTGTCCCCTCCAGTCAGGCTGAAACCAGCCAGG TGGCAGAAGTCCAGCACCAAGATGACTGAGCGCTTCGACTGTCACCACTGTGAGAACTCC CTCTTCGGCCGGAAGTATGTCCTGCGGGAGGAGCAGCCCTACTGCGTAGGCTGCTTCGAG GCACTCTTCGCCAGCACATGCGAGGAGTGTGGGAAGCTGATTGGATGCGACTGCAAGGAC TTATCCTACAAGGACCGGCACTGGCACGAGGCCTGCTTCCACTGCTCACGATGCAGGAGC TCCCTCGTGGACAAGCCATCTGCTGCCAAGGAGGACCAGGTGCTCTGCACTGACTGCTAC TCGCAGGAGTACTCATCCCGCTGCCAGGAGTGCAGGAAGGCCATCATGCCAGGCACCCGC AAGATGGAATACAAGGGCAGCAGCTGGCACGAGACCTGCTTCACCTGCCACCGCTGCCAG CAGCCCATTGGGACCAAGAGCTTCATCCCTAAGGACGGCCAGAACTTCTGTGTGCCCTGC TATGAGAAGCAGCACGCCTTGCAGTGCATTCAGTGCAAAAAGCCCATCACCAGCGGGGGC GTCACGTACCGTGAGCAGCCCTGGCACAGGGAGTGCTTCGTGTGCACCGCCTGCAAGAAG CCACTGTCCGGCCAGCGCTTCACGTCCCGTGACGAGTTCGCCTACTGCCTGGGCTGCTTC TGCGACCTGTACGCCAAGAAGTGTACAGGCTGCGCCAACCCCATCAGTGGACTGGGCGGC ACCAAGTACATCTCCTTCGAGGAGCGGCAGTGGCACAACGACTGCTTCAACTGCAAGAAG TGCTCGCTGTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 654-770, - strand, RNAz p=0.561877 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 654-770, - strand, RNAz p=0.561877 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 226-413, gnl|bosTau2|chr11 (6823373-6823187) | |
| 226-413, gnl|canFam2|chr10 (41174583-41174381) | |
| 226-413, gnl|danRer3|chr22 (956698-956505) | |
| 226-413, gnl|dasNov1|scaffold_1472 (126029-125841) | |
| 226-413, gnl|echTel1|scaffold_309909 (68945-69131) | |
| 226-413, gnl|fr1|chrUn (88912751-88912551) | |
| 226-413, gnl|galGal2|chr1 (128261063-128261266) | |
| 226-413, gnl|hg17|chr2 (105448530-105448732) | |
| 226-413, gnl|Hg17|chr2 (105448719-105448533) | |
| 226-413, gnl|loxAfr1|scaffold_4291 (60744-60947) | |
| 226-413, gnl|mm7|chr1 (43382081-43382281) | |
| 226-413, gnl|Mm7|chr1 (43382270-43382084) | |
| 226-413, gnl|monDom2|scaffold_11 (24253542-24253746) | |
| 226-413, gnl|oryCun1|scaffold_172974 (52206-52398) | |
| 226-413, gnl|panTro1|chr12 (108413175-108413377) | |
| 226-413, gnl|rheMac2|chr13 (105261671-105261873) | |
| 226-413, gnl|rn3|chr9 (42338683-42338881) | |
| 226-413, gnl|tetNig1|chr2 (9025837-9026018) | |
| 226-413, gnl|xenTro1|scaffold_343 (840232-840050) | |
| 581-770, gnl|bosTau2|chr11 (6817970-6817781) | |
| 581-770, gnl|canFam2|chr10 (41184567-41184424) | |
| 581-770, gnl|danRer3|chr22 (960290-960156) | |
| 581-770, gnl|dasNov1|scaffold_1472 (131497-131354) | |
| 581-770, gnl|echTel1|scaffold_177739 (8014-8157) | |
| 581-770, gnl|fr1|chrUn (88913965-88913821) | |
| 581-770, gnl|galGal2|chr1 (128257311-128257454) | |
| 581-770, gnl|hg17|chr2 (105438250-105438393) | |
| 581-770, gnl|Hg17|chr2 (105438448-105438259) | |
| 581-770, gnl|loxAfr1|scaffold_4291 (49976-50119) | |
| 581-770, gnl|mm7|chr1 (43368621-43368764) | |
| 581-770, gnl|Mm7|chr1 (43368819-43368630) | |
| 581-770, gnl|monDom2|scaffold_11 (24237029-24237169) | |
| 581-770, gnl|oryCun1|scaffold_169493 (17808-17951) | |
| 581-770, gnl|panTro1|chr12 (108402615-108402751) | |
| 581-770, gnl|rheMac2|chr13 (105251163-105251306) | |
| 581-770, gnl|rn3|chr9 (42325374-42325517) | |
| 581-770, gnl|tetNig1|chr10 (8170843-8170700) | |
| 581-770, gnl|xenTro1|scaffold_343 (844258-844115) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 226-413, gnl|bosTau2|chr11 (6823373-6823187) | |
| 226-413, gnl|canFam2|chr10 (41174583-41174381) | |
| 226-413, gnl|danRer3|chr22 (956698-956505) | |
| 226-413, gnl|dasNov1|scaffold_1472 (126029-125841) | |
| 226-413, gnl|echTel1|scaffold_309909 (68945-69131) | |
| 226-413, gnl|fr1|chrUn (88912751-88912551) | |
| 226-413, gnl|galGal2|chr1 (128261063-128261266) | |
| 226-413, gnl|hg17|chr2 (105448530-105448732) | |
| 226-413, gnl|Hg17|chr2 (105448719-105448533) | |
| 226-413, gnl|loxAfr1|scaffold_4291 (60744-60947) | |
| 226-413, gnl|mm7|chr1 (43382081-43382281) | |
| 226-413, gnl|Mm7|chr1 (43382270-43382084) | |
| 226-413, gnl|monDom2|scaffold_11 (24253542-24253746) | |
| 226-413, gnl|oryCun1|scaffold_172974 (52206-52398) | |
| 226-413, gnl|panTro1|chr12 (108413175-108413377) | |
| 226-413, gnl|rheMac2|chr13 (105261671-105261873) | |
| 226-413, gnl|rn3|chr9 (42338683-42338881) | |
| 226-413, gnl|tetNig1|chr2 (9025837-9026018) | |
| 226-413, gnl|xenTro1|scaffold_343 (840232-840050) | |
| 581-770, gnl|bosTau2|chr11 (6817970-6817781) | |
| 581-770, gnl|canFam2|chr10 (41184567-41184424) | |
| 581-770, gnl|danRer3|chr22 (960290-960156) | |
| 581-770, gnl|dasNov1|scaffold_1472 (131497-131354) | |
| 581-770, gnl|echTel1|scaffold_177739 (8014-8157) | |
| 581-770, gnl|fr1|chrUn (88913965-88913821) | |
| 581-770, gnl|galGal2|chr1 (128257311-128257454) | |
| 581-770, gnl|hg17|chr2 (105438250-105438393) | |
| 581-770, gnl|Hg17|chr2 (105438448-105438259) | |
| 581-770, gnl|loxAfr1|scaffold_4291 (49976-50119) | |
| 581-770, gnl|mm7|chr1 (43368621-43368764) | |
| 581-770, gnl|Mm7|chr1 (43368819-43368630) | |
| 581-770, gnl|monDom2|scaffold_11 (24237029-24237169) | |
| 581-770, gnl|oryCun1|scaffold_169493 (17808-17951) | |
| 581-770, gnl|panTro1|chr12 (108402615-108402751) | |
| 581-770, gnl|rheMac2|chr13 (105251163-105251306) | |
| 581-770, gnl|rn3|chr9 (42325374-42325517) | |
| 581-770, gnl|tetNig1|chr10 (8170843-8170700) | |
| 581-770, gnl|xenTro1|scaffold_343 (844258-844115) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |