Ss1.1-rpigcb_17114.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGCGGCAAGCTTTTACCAACGTGCTTTGCTGGCAAATGCTCTGACTAGTGCTCTGAG GCTGCACCAGAGATTACCACACTTCCAGTTAAGCAGAGCATTCCTGGCCCAGGCTTTGTT AGAGGACAGCTGCCACTACCTGTTGTATTCACTCATCTTTGTCAATTCCTACCCGGTTAC AATGAGTATTTTCCCAGTTTTGTTATTTTCTTTGCTTCATGCTGCCACATACACGAAAAA GGTCCTTGATGCTAAGGGTTCAAATAGTTTACCTCTGCTGAGATCTGTCTTGGATAAATT AAGTGCTAATCAACAGAATATTCTGAAATTCATTGCTTGTAATGAAATATTCTTGATGCC TGCTACAGTTTTTATGCTTTTTAGTGGTCAAGGAAGTTTGCTTCAGCCTTTTATATACTA TAGATTCCTTACTCTTCGGTATTCCTCTCGCAGAAATCCATATTGTCGGACCTTGTTTAA TGAACTGAGGATTGTTGTCGAACATCTAATAATGAAACCTGCTTGCCCACTGTTTGTGAG AAGACTTTGTCTCCAGAGCATTGCCTTTATAAGCAGATTGGCACCAACAGTTGCATAGTT TAACAACCAGCTAAGTTAGATGTAATATAAATAAGCATTATTAGCTGCTGGTACTTTTGC TAGGGGTGGTTAATTCCAAGTGTAAAACTGACCTCAATGCAATTTATATAATTAACATAA ATGCATCTCAGTAGAAAAATAATCATTTTCCTGGCATGTTAAATCAAGCCTTTTAAACAT TTTCTGAGAAACTTTTATTGTAATGTATTGTTAATAGCTAAGGAAGTCTGGATCTTGTGA TAAATGTATCAAAAATTCTTTAGATGCTGCTGTGCCTTTATCATGAAGTTCTTTATTTCT CTAAAAATAGCTCTAAAATTTGTTGCAATCTAATTGGTAATCTGAATTTGTATCTGGCAT GAGTTCATTAAGATAATACTAACATGTAAATTCAGTATATTTTGAGACAGTATTCTTTTG CCATTCAGTAATTTTGGTTGATGATTTTAACAGAAACATTTTGCACTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGCGGCAAGCTTTTACCAACGTGCTTTGCTGGCAAATGCTCTGACTAGTGCTCTGAG GCTGCACCAGAGATTACCACACTTCCAGTTAAGCAGAGCATTCCTGGCCCAGGCTTTGTT AGAGGACAGCTGCCACTACCTGTTGTATTCACTCATCTTTGTCAATTCCTACCCGGTTAC AATGAGTATTTTCCCAGTTTTGTTATTTTCTTTGCTTCATGCTGCCACATACACGAAAAA GGTCCTTGATGCTAAGGGTTCAAATAGTTTACCTCTGCTGAGATCTGTCTTGGATAAATT AAGTGCTAATCAACAGAATATTCTGAAATTCATTGCTTGTAATGAAATATTCTTGATGCC TGCTACAGTTTTTATGCTTTTTAGTGGTCAAGGAAGTTTGCTTCAGCCTTTTATATACTA TAGATTCCTTACTCTTCGGTATTCCTCTCGCAGAAATCCATATTGTCGGACCTTGTTTAA TGAACTGAGGATTGTTGTCGAACATCTAATAATGAAACCTGCTTGCCCACTGTTTGTGAG AAGACTTTGTCTCCAGAGCATTGCCTTTATAAGCAGATTGGCACCAACAGTTGCATAGTT TAACAACCAGCTAAGTTAGATGTAATATAAATAAGCATTATTAGCTGCTGGTACTTTTGC TAGGGGTGGTTAATTCCAAGTGTAAAACTGACCTCAATGCAATTTATATAATTAACATAA ATGCATCTCAGTAGAAAAATAATCATTTTCCTGGCATGTTAAATCAAGCCTTTTAAACAT TTTCTGAGAAACTTTTATTGTAATGTATTGTTAATAGCTAAGGAAGTCTGGATCTTGTGA TAAATGTATCAAAAATTCTTTAGATGCTGCTGTGCCTTTATCATGAAGTTCTTTATTTCT CTAAAAATAGCTCTAAAATTTGTTGCAATCTAATTGGTAATCTGAATTTGTATCTGGCAT GAGTTCATTAAGATAATACTAACATGTAAATTCAGTATATTTTGAGACAGTATTCTTTTG CCATTCAGTAATTTTGGTTGATGATTTTAACAGAAACATTTTGCACTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 64-177, + strand, RNAz p=0.550747 | |
| 539-658, - strand, RNAz p=0.715122 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 64-177, + strand, RNAz p=0.550747 | |
| 539-658, - strand, RNAz p=0.715122 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-202, gnl|bosTau2|chr6 (32938390-32938592) | |
| 1-202, gnl|canFam2|chr13 (42063414-42063599) | |
| 1-202, gnl|danRer3|chrNA (143780206-143780389) | |
| 1-202, gnl|dasNov1|scaffold_26721 (39038-38855) | |
| 1-202, gnl|fr1|chrUn (69239044-69238863) | |
| 1-202, gnl|galGal2|chr4 (68847613-68847428) | |
| 1-202, gnl|hg17|chr4 (41782131-41782316) | |
| 1-202, gnl|Hg17|chr4 (41782147-41782349) | |
| 1-202, gnl|loxAfr1|scaffold_159 (27569-27378) | |
| 1-202, gnl|mm7|chr5 (66619783-66619968) | |
| 1-202, gnl|Mm7|chr5 (66619799-66619999) | |
| 1-202, gnl|monDom2|scaffold_26 (7348247-7348432) | |
| 1-202, gnl|oryCun1|scaffold_208823 (94117-93932) | |
| 1-202, gnl|panTro1|chr3 (44468378-44468563) | |
| 1-202, gnl|rheMac2|chr5 (36980673-36980858) | |
| 1-202, gnl|rn3|chr14 (43515579-43515394) | |
| 1-202, gnl|tetNig1|chr20 (1911606-1911421) | |
| 1-202, gnl|xenTro1|scaffold_84 (1107236-1107054) | |
| 246-384, gnl|bosTau2|chr6 (32943152-32943290) | |
| 246-384, gnl|canFam2|chr13 (42068522-42068687) | |
| 246-384, gnl|danRer3|chrNA (143783420-143783616) | |
| 246-384, gnl|fr1|chrUn (69238439-69238276) | |
| 246-384, gnl|galGal2|chr4 (68845422-68845259) | |
| 246-384, gnl|hg17|chr4 (41787708-41787873) | |
| 246-384, gnl|Hg17|chr4 (41787734-41787871) | |
| 246-384, gnl|loxAfr1|scaffold_159 (21336-21174) | |
| 246-384, gnl|mm7|chr5 (66624004-66624169) | |
| 246-384, gnl|Mm7|chr5 (66624030-66624167) | |
| 246-384, gnl|monDom2|scaffold_26 (7352624-7352793) | |
| 246-384, gnl|panTro1|chr3 (44474238-44474403) | |
| 246-384, gnl|rheMac2|chr5 (36986429-36986594) | |
| 246-384, gnl|rn3|chr14 (43511349-43511184) | |
| 246-384, gnl|tetNig1|chr20 (1910780-1910630) | |
| 246-384, gnl|xenTro1|scaffold_84 (1105951-1105801) | |
| 460-1061, gnl|bosTau2|chr6 (32949220-32949824) | |
| 460-1061, gnl|Hg17|chr4 (41797006-41797598) | |
| 460-1061, gnl|Mm7|chr5 (66641610-66642189) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-202, gnl|bosTau2|chr6 (32938390-32938592) | |
| 1-202, gnl|canFam2|chr13 (42063414-42063599) | |
| 1-202, gnl|danRer3|chrNA (143780206-143780389) | |
| 1-202, gnl|dasNov1|scaffold_26721 (39038-38855) | |
| 1-202, gnl|fr1|chrUn (69239044-69238863) | |
| 1-202, gnl|galGal2|chr4 (68847613-68847428) | |
| 1-202, gnl|hg17|chr4 (41782131-41782316) | |
| 1-202, gnl|Hg17|chr4 (41782147-41782349) | |
| 1-202, gnl|loxAfr1|scaffold_159 (27569-27378) | |
| 1-202, gnl|mm7|chr5 (66619783-66619968) | |
| 1-202, gnl|Mm7|chr5 (66619799-66619999) | |
| 1-202, gnl|monDom2|scaffold_26 (7348247-7348432) | |
| 1-202, gnl|oryCun1|scaffold_208823 (94117-93932) | |
| 1-202, gnl|panTro1|chr3 (44468378-44468563) | |
| 1-202, gnl|rheMac2|chr5 (36980673-36980858) | |
| 1-202, gnl|rn3|chr14 (43515579-43515394) | |
| 1-202, gnl|tetNig1|chr20 (1911606-1911421) | |
| 1-202, gnl|xenTro1|scaffold_84 (1107236-1107054) | |
| 246-384, gnl|bosTau2|chr6 (32943152-32943290) | |
| 246-384, gnl|canFam2|chr13 (42068522-42068687) | |
| 246-384, gnl|danRer3|chrNA (143783420-143783616) | |
| 246-384, gnl|fr1|chrUn (69238439-69238276) | |
| 246-384, gnl|galGal2|chr4 (68845422-68845259) | |
| 246-384, gnl|hg17|chr4 (41787708-41787873) | |
| 246-384, gnl|Hg17|chr4 (41787734-41787871) | |
| 246-384, gnl|loxAfr1|scaffold_159 (21336-21174) | |
| 246-384, gnl|mm7|chr5 (66624004-66624169) | |
| 246-384, gnl|Mm7|chr5 (66624030-66624167) | |
| 246-384, gnl|monDom2|scaffold_26 (7352624-7352793) | |
| 246-384, gnl|panTro1|chr3 (44474238-44474403) | |
| 246-384, gnl|rheMac2|chr5 (36986429-36986594) | |
| 246-384, gnl|rn3|chr14 (43511349-43511184) | |
| 246-384, gnl|tetNig1|chr20 (1910780-1910630) | |
| 246-384, gnl|xenTro1|scaffold_84 (1105951-1105801) | |
| 460-1061, gnl|bosTau2|chr6 (32949220-32949824) | |
| 460-1061, gnl|Hg17|chr4 (41797006-41797598) | |
| 460-1061, gnl|Mm7|chr5 (66641610-66642189) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spc (0.113366) | |
| cty (0.10408) |