Non-Coding RNA Search

Ss1.1-rpigcb_17485.5

Sequence:


               
               GTCTTTGAAGAGAGCATGCAAAGTGCTAACTGTATAAGCTAGATTTTCTAGGGGCTGTGT
TCTGGGGATGAGGGTAGTGGGAATTGTATGGGGTTTTTTGTTTTGTTTCAAGATAGTAAA
TAAGCTGAGCGATTAAGGGAGCCCTAGTAGAAAGGGATAGGTTGTGGCAGTTGAGGTCTA
AAGTCTTCCCAGTATCACTGAGATCAAGACAACTGTGGACAAATATGTCTAGGTCTGAGT
CTCTGGGCCACAGATTCCTTTTGCCTGGGTGGAGAGAAAAAGACAAGTTCTCAGTGGTAA
GGTGAGCTGTTTCTTGTTGATTTCAAGCAAAGTGCATCTATAGAAGCTTTGTGCTGAGTG
GGTTTTTCGGTCTTGTTTTAAGTGCTGGGAAATTATAGCAGGAGTCACAGTGCCTGCAGG
TTGTTGTCATCACTCTTGTTGGACCTTGATAGCCTCATCAAGGGGGAGAGTTATTCTTGA
GGATTTCATTCTCCTAGATAAACAGAACTTTAGGGAAAAATGGCTGTGGCTTAGCTTTTC
AGCTGATGCAGGGTAATGAGCTTTCCAATTGGTTTTCTTCCCACCTCTGCGAAGATGTCT
GCACTAAGACTCTTAACCCCAGAACTTGTATAAGTATTCTAGCACCCATTAGTTGATGAG
TTGGTCATTGTTTCTCTTTATTGATGATGTGTTAATACCAATCTTTTTTAAAAATTTTCT
TGTATGTCAGTGCAGATTGTAGGTAGGGAGGGAAAAAAGCAAAGAGGATGGAAGTGGGAT
AGTTCTCTTTAGAGCTTAGAGTCTGGTTTTTCCTCAACACACTTATTTCTCAACCACAGT
TGGTGGAATTAATGATAGAGGCAAGAAGAAGTGAGCCACAACAATCTAGTTTAATGACTG
TTCCATTTGCTTAGGAAAAGCTAGGTGAATCACAGCTCGTTAGAGTCCTGGGCCCAAATG
GAGCCAAAAATAGGGTCATTTCGCTGACTGGGCTTCTTAAGCGTGGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTTTGAAGAGAGCATGCAAAGTGCTAACTGTATAAGCTAGATTTTCTAGGGGCTGTGT
TCTGGGGATGAGGGTAGTGGGAATTGTATGGGGTTTTTTGTTTTGTTTCAAGATAGTAAA
TAAGCTGAGCGATTAAGGGAGCCCTAGTAGAAAGGGATAGGTTGTGGCAGTTGAGGTCTA
AAGTCTTCCCAGTATCACTGAGATCAAGACAACTGTGGACAAATATGTCTAGGTCTGAGT
CTCTGGGCCACAGATTCCTTTTGCCTGGGTGGAGAGAAAAAGACAAGTTCTCAGTGGTAA
GGTGAGCTGTTTCTTGTTGATTTCAAGCAAAGTGCATCTATAGAAGCTTTGTGCTGAGTG
GGTTTTTCGGTCTTGTTTTAAGTGCTGGGAAATTATAGCAGGAGTCACAGTGCCTGCAGG
TTGTTGTCATCACTCTTGTTGGACCTTGATAGCCTCATCAAGGGGGAGAGTTATTCTTGA
GGATTTCATTCTCCTAGATAAACAGAACTTTAGGGAAAAATGGCTGTGGCTTAGCTTTTC
AGCTGATGCAGGGTAATGAGCTTTCCAATTGGTTTTCTTCCCACCTCTGCGAAGATGTCT
GCACTAAGACTCTTAACCCCAGAACTTGTATAAGTATTCTAGCACCCATTAGTTGATGAG
TTGGTCATTGTTTCTCTTTATTGATGATGTGTTAATACCAATCTTTTTTAAAAATTTTCT
TGTATGTCAGTGCAGATTGTAGGTAGGGAGGGAAAAAAGCAAAGAGGATGGAAGTGGGAT
AGTTCTCTTTAGAGCTTAGAGTCTGGTTTTTCCTCAACACACTTATTTCTCAACCACAGT
TGGTGGAATTAATGATAGAGGCAAGAAGAAGTGAGCCACAACAATCTAGTTTAATGACTG
TTCCATTTGCTTAGGAAAAGCTAGGTGAATCACAGCTCGTTAGAGTCCTGGGCCCAAATG
GAGCCAAAAATAGGGTCATTTCGCTGACTGGGCTTCTTAAGCGTGGAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               193-312, - strand, RNAz p=0.992591

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-312, - strand, RNAz p=0.992591

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-946, gnl|bosTau2|chr5 (25883238-25882322)
               

               
               1-946, gnl|Hg17|chr12 (47022093-47021124)
               

               
               1-946, gnl|Mm7|chr15 (98270166-98269203)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-946, gnl|bosTau2|chr5 (25883238-25882322)
               

               
               1-946, gnl|Hg17|chr12 (47022093-47021124)
               

               
               1-946, gnl|Mm7|chr15 (98270166-98269203)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-946, gnl\|bosTau2\|chr5 (25883238-25882322)
	1-946, gnl\|Hg17\|chr12 (47022093-47021124)
	1-946, gnl\|Mm7\|chr15 (98270166-98269203)