Non-Coding RNA Search

Ss1.1-rpigcb_17559.5

Sequence:


               
               CCTACCTCGGCCGCGGGTGCTCGCAGCTCGGAAATGGCGGGATTTGGTGCTATGGAGAAA
TTTTTGGTTGAATACAAGAGTGCAGTTGAGAAGAAACTTGCAGAATACAAATGTAATACC
AACACAGCAATTGAACTAAAATTAGTTCGTTTTCCTGAAGATCTTGAGAACGACATTAGA
ACTTTCTTTCCTGAATATACCCATCAACTCTTTGGGGATGATGAAACTGCTTTTGGTTAC
AAGGGTCTGAAGATTTTGTTATATTATATTGCTGGTAGCCTGTCAACAATGTTCCGTGTT
GAATATGCATCCAAAGTTGATGAGAACTTTGACTGTGTGGAGGCAGATGATGTAGAGGGC
AAAATTAGACAAATCATTCCACCTGGATTTTGCACAAACACAAGTGATTTTCTTTCACTG
CTGGAAAAAGAAGTTGATTTCAAGCCATTTGGAACCTTACTCCATACATACTCGGTTCTC
AGTCCAACAGGAGGAGAAAACTTTACCTTTCAGATATATAAGGCTGACATGACATGTATA
GGCTTTCGAGAATATCATGAAAGGCTTCAGACCTTTTTGACGTGGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTACCTCGGCCGCGGGTGCTCGCAGCTCGGAAATGGCGGGATTTGGTGCTATGGAGAAA
TTTTTGGTTGAATACAAGAGTGCAGTTGAGAAGAAACTTGCAGAATACAAATGTAATACC
AACACAGCAATTGAACTAAAATTAGTTCGTTTTCCTGAAGATCTTGAGAACGACATTAGA
ACTTTCTTTCCTGAATATACCCATCAACTCTTTGGGGATGATGAAACTGCTTTTGGTTAC
AAGGGTCTGAAGATTTTGTTATATTATATTGCTGGTAGCCTGTCAACAATGTTCCGTGTT
GAATATGCATCCAAAGTTGATGAGAACTTTGACTGTGTGGAGGCAGATGATGTAGAGGGC
AAAATTAGACAAATCATTCCACCTGGATTTTGCACAAACACAAGTGATTTTCTTTCACTG
CTGGAAAAAGAAGTTGATTTCAAGCCATTTGGAACCTTACTCCATACATACTCGGTTCTC
AGTCCAACAGGAGGAGAAAACTTTACCTTTCAGATATATAAGGCTGACATGACATGTATA
GGCTTTCGAGAATATCATGAAAGGCTTCAGACCTTTTTGACGTGGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62702323|gb|AAX93247.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62702323|gb|AAX93247.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               40-145, gnl|bosTau2|chr2 (17711036-17710931)
               

               
               40-145, gnl|Hg17|chr2 (172607553-172607658)
               

               
               40-145, gnl|Mm7|chr2 (71233596-71233708)
               


               
               341-523, gnl|bosTau2|chr2 (17692311-17692129)
               

               
               341-523, gnl|Hg17|chr2 (172647364-172647546)
               

               
               341-523, gnl|Mm7|chr2 (71263883-71264065)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-145, gnl|bosTau2|chr2 (17711036-17710931)
               

               
               40-145, gnl|Hg17|chr2 (172607553-172607658)
               

               
               40-145, gnl|Mm7|chr2 (71233596-71233708)
               


               
               341-523, gnl|bosTau2|chr2 (17692311-17692129)
               

               
               341-523, gnl|Hg17|chr2 (172647364-172647546)
               

               
               341-523, gnl|Mm7|chr2 (71263883-71264065)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.20816)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	40-145, gnl\|bosTau2\|chr2 (17711036-17710931)
	40-145, gnl\|Hg17\|chr2 (172607553-172607658)
	40-145, gnl\|Mm7\|chr2 (71233596-71233708)

	341-523, gnl\|bosTau2\|chr2 (17692311-17692129)
	341-523, gnl\|Hg17\|chr2 (172647364-172647546)
	341-523, gnl\|Mm7\|chr2 (71263883-71264065)