Non-Coding RNA Search

Ss1.1-rpigcb_17663.5

Sequence:


               
               CCCACGACTTCACTATCAGGAGCTGGTACATACACTACCTCTTCTTTGAGTACAAAATCT
ACAACTACATCAGACCCTCCTAATATTTGTAAAGTAAAACCCCAACAATTACAGACAAGC
AGCCTGCCTTCTGCAAGTCATTTTTCACAGTTAAGTTGTATGCCTTCCCTTATTGCCCAG
CAACAACAGAGTCCACAAGTCTATGTGTCTCAGTCTGCAGCAGCTCAAATCCCTGCTTTT
TATATGGACACAAGTCATTTATTCAATACGCAACATGCACGATTGGCTCCACCTTCCTTG
GCTCAGCAACAAGGCTTCCAACCAGGTCTCTCTCAGCCAACTTCAGTTCAGCAGATTCCA
ATCCCTATATATGCACCACTGCAAGGACAGCATCAAGCCCAACTGAGTCTGGGTGCTGGG
CCTGCTGTTTCCCAGGCTCAGGAACTATTCAGTTCTTCACTTCAACCATATAGATCCCAG
CCAGCCTTCATGCAAAGCAATCTATCCCAGCCATCTGTGGTGCTTTCTGGTACTGCCATC
CATAACTTTCCAGCTGTCCAACACCAGGAACTTGCCAAGGCACAGTCGGGTCTTGCCTTT
CAACAAACGTCAAATACTCAGCCATTTTAAAAAAAAAAAAAAACTAAGCCATTTTGGGGG
GGCCGTTAAAAAATATTTTGGGGGGGGCCCAGGTAAAACCCCCCCCCGTTTTTTGGAAAA
AAGGGGCCCCTAAGGAAATTGGAAAAAAAACCCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGACTTCACTATCAGGAGCTGGTACATACACTACCTCTTCTTTGAGTACAAAATCT
ACAACTACATCAGACCCTCCTAATATTTGTAAAGTAAAACCCCAACAATTACAGACAAGC
AGCCTGCCTTCTGCAAGTCATTTTTCACAGTTAAGTTGTATGCCTTCCCTTATTGCCCAG
CAACAACAGAGTCCACAAGTCTATGTGTCTCAGTCTGCAGCAGCTCAAATCCCTGCTTTT
TATATGGACACAAGTCATTTATTCAATACGCAACATGCACGATTGGCTCCACCTTCCTTG
GCTCAGCAACAAGGCTTCCAACCAGGTCTCTCTCAGCCAACTTCAGTTCAGCAGATTCCA
ATCCCTATATATGCACCACTGCAAGGACAGCATCAAGCCCAACTGAGTCTGGGTGCTGGG
CCTGCTGTTTCCCAGGCTCAGGAACTATTCAGTTCTTCACTTCAACCATATAGATCCCAG
CCAGCCTTCATGCAAAGCAATCTATCCCAGCCATCTGTGGTGCTTTCTGGTACTGCCATC
CATAACTTTCCAGCTGTCCAACACCAGGAACTTGCCAAGGCACAGTCGGGTCTTGCCTTT
CAACAAACGTCAAATACTCAGCCATTTTAAAAAAAAAAAAAAACTAAGCCATTTTGGGGG
GGCCGTTAAAAAATATTTTGGGGGGGGCCCAGGTAAAACCCCCCCCCGTTTTTTGGAAAA
AAGGGGCCCCTAAGGAAATTGGAAAAAAAACCCCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               362-478, - strand, RNAz p=0.551643

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-478, - strand, RNAz p=0.551643

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               60-621, gnl|bosTau2|chr15 (8679509-8678970)
               

               
               60-621, gnl|Hg17|chr1 (168278271-168284900)
               

               
               60-621, gnl|Mm7|chr1 (162643708-162641137)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-621, gnl|bosTau2|chr15 (8679509-8678970)
               

               
               60-621, gnl|Hg17|chr1 (168278271-168284900)
               

               
               60-621, gnl|Mm7|chr1 (162643708-162641137)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	60-621, gnl\|bosTau2\|chr15 (8679509-8678970)
	60-621, gnl\|Hg17\|chr1 (168278271-168284900)
	60-621, gnl\|Mm7\|chr1 (162643708-162641137)