Non-Coding RNA Search

Ss1.1-rpigcb_17731.5

Sequence:


               
               CCCCCCCGCTTAAGAGGACATGCCCGGATATGCAGGATAAGCCGAAAGGGAAACCCAAGC
GCATCTGGCCCCAGATCTCCTGGAACAACGGCGTGGACTTTTGGTGGCATGAACTCATGC
AAGACGCAGGAGATGAGTGTGAGCCCGAGTGGTGTGATGCTGAAGACCCACTCTTCATCC
TGTACACCAGCGGCTCCACAGGCAAACCCAAGGGTGTGGTACATACCGTTGGGGGATATA
TGCTCTATGTGGCTACAACCTTCAAGTATGTATTTGACTTCCATGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCCGCTTAAGAGGACATGCCCGGATATGCAGGATAAGCCGAAAGGGAAACCCAAGC
GCATCTGGCCCCAGATCTCCTGGAACAACGGCGTGGACTTTTGGTGGCATGAACTCATGC
AAGACGCAGGAGATGAGTGTGAGCCCGAGTGGTGTGATGCTGAAGACCCACTCTTCATCC
TGTACACCAGCGGCTCCACAGGCAAACCCAAGGGTGTGGTACATACCGTTGGGGGATATA
TGCTCTATGTGGCTACAACCTTCAAGTATGTATTTGACTTCCATGCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56204603|emb|CAI19314.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56204603|emb|CAI19314.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               91-210, + strand, RNAz p=0.759864
               

               
               96-213, + strand, RNAz p=0.889192

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               91-210, + strand, RNAz p=0.759864
               

               
               96-213, + strand, RNAz p=0.889192

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC012172, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC012172, +

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               72-213, gnl|bosTau2|chr13 (46626063-46625922)
               

               
               72-213, gnl|canFam2|chr24 (26937519-26937692)
               

               
               72-213, gnl|danRer3|chr23 (5283344-5283487)
               

               
               72-213, gnl|dasNov1|scaffold_16043 (10804-10645)
               

               
               72-213, gnl|echTel1|scaffold_309010 (116657-116832)
               

               
               72-213, gnl|fr1|chrUn (194908638-194908492)
               

               
               72-213, gnl|galGal2|chr20 (2503991-2503836)
               

               
               72-213, gnl|hg17|chr20 (32970895-32971071)
               

               
               72-213, gnl|Hg17|chr20 (32970896-32971037)
               

               
               72-213, gnl|loxAfr1|scaffold_57357 (5391-5568)
               

               
               72-213, gnl|mm7|chr2 (155296700-155296884)
               

               
               72-213, gnl|Mm7|chr2 (155296710-155296850)
               

               
               72-213, gnl|monDom2|scaffold_6 (12084724-12084565)
               

               
               72-213, gnl|oryCun1|scaffold_177183 (2971-2800)
               

               
               72-213, gnl|panTro1|chr21_random (9952655-9952479)
               

               
               72-213, gnl|rheMac2|chr10 (29640200-29640025)
               

               
               72-213, gnl|rn3|chr3 (145954847-145955033)
               

               
               72-213, gnl|tetNig1|chrUn_random (30277738-30277880)
               

               
               72-213, gnl|xenTro1|scaffold_35 (3253437-3253260)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               72-213, gnl|bosTau2|chr13 (46626063-46625922)
               

               
               72-213, gnl|canFam2|chr24 (26937519-26937692)
               

               
               72-213, gnl|danRer3|chr23 (5283344-5283487)
               

               
               72-213, gnl|dasNov1|scaffold_16043 (10804-10645)
               

               
               72-213, gnl|echTel1|scaffold_309010 (116657-116832)
               

               
               72-213, gnl|fr1|chrUn (194908638-194908492)
               

               
               72-213, gnl|galGal2|chr20 (2503991-2503836)
               

               
               72-213, gnl|hg17|chr20 (32970895-32971071)
               

               
               72-213, gnl|Hg17|chr20 (32970896-32971037)
               

               
               72-213, gnl|loxAfr1|scaffold_57357 (5391-5568)
               

               
               72-213, gnl|mm7|chr2 (155296700-155296884)
               

               
               72-213, gnl|Mm7|chr2 (155296710-155296850)
               

               
               72-213, gnl|monDom2|scaffold_6 (12084724-12084565)
               

               
               72-213, gnl|oryCun1|scaffold_177183 (2971-2800)
               

               
               72-213, gnl|panTro1|chr21_random (9952655-9952479)
               

               
               72-213, gnl|rheMac2|chr10 (29640200-29640025)
               

               
               72-213, gnl|rn3|chr3 (145954847-145955033)
               

               
               72-213, gnl|tetNig1|chrUn_random (30277738-30277880)
               

               
               72-213, gnl|xenTro1|scaffold_35 (3253437-3253260)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nms (0.213858)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               cty (0.10408)

	91-210, + strand, RNAz p=0.759864
	96-213, + strand, RNAz p=0.889192

	72-213, gnl\|bosTau2\|chr13 (46626063-46625922)
	72-213, gnl\|canFam2\|chr24 (26937519-26937692)
	72-213, gnl\|danRer3\|chr23 (5283344-5283487)
	72-213, gnl\|dasNov1\|scaffold_16043 (10804-10645)
	72-213, gnl\|echTel1\|scaffold_309010 (116657-116832)
	72-213, gnl\|fr1\|chrUn (194908638-194908492)
	72-213, gnl\|galGal2\|chr20 (2503991-2503836)
	72-213, gnl\|hg17\|chr20 (32970895-32971071)
	72-213, gnl\|Hg17\|chr20 (32970896-32971037)
	72-213, gnl\|loxAfr1\|scaffold_57357 (5391-5568)
	72-213, gnl\|mm7\|chr2 (155296700-155296884)
	72-213, gnl\|Mm7\|chr2 (155296710-155296850)
	72-213, gnl\|monDom2\|scaffold_6 (12084724-12084565)
	72-213, gnl\|oryCun1\|scaffold_177183 (2971-2800)
	72-213, gnl\|panTro1\|chr21_random (9952655-9952479)
	72-213, gnl\|rheMac2\|chr10 (29640200-29640025)
	72-213, gnl\|rn3\|chr3 (145954847-145955033)
	72-213, gnl\|tetNig1\|chrUn_random (30277738-30277880)
	72-213, gnl\|xenTro1\|scaffold_35 (3253437-3253260)