Non-Coding RNA Search

Ss1.1-rpigcb_1803.5

Sequence:


               
               CCGGCTTCGGTAAGATGTTTGTGGCAGCTCGGACAGGCCAGAGAACCTTGAGAAAGGTGG
TCTCGGGATGCCGTCCAAAATCGGCGACAGCGACCGGAGTCCCGGCTCCTGCGCAGGGGC
CTCCGCGGAACATCAGATACTTAGCTTCCTGTGGTATACTGATGAACAGAACTCTTCCAC
TGCATTCCTCATTTTTGCCTAAGGAGATATATGCAAGAACCTTCTTCAGAATTGCTGCAC
CATTAATAAACAAAAGAAAAGAATATTCAGAGAGGAGAATTATAGGATATTCTATGCAGG
AAATGTATGACGTAGTATCGGGAATGGAAGATTACAAGCATTTTGTGCCTTGGTGCAAAA
AATCAGATGTAATATCAAGGAGATCTGGATACTGCAAAACACGATTAGAAATTGGGTTTC
CACCCGTATTGGAGCGCTATACGTCAGTAGTAACCTTGGTGAAACCACATTTGGTAAAGG
CATCCTGTACAGATGGGAAGCTCTTTAATCACTTAGAGACTGTTTGGCGTTTTAGCCCAG
GTCTTCCTGGCTACCCAAGAACTTGTACTTTGGATTTTTCAATTTCTTTTGAATTTCGAT
CACTTCTGCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGCTTCGGTAAGATGTTTGTGGCAGCTCGGACAGGCCAGAGAACCTTGAGAAAGGTGG
TCTCGGGATGCCGTCCAAAATCGGCGACAGCGACCGGAGTCCCGGCTCCTGCGCAGGGGC
CTCCGCGGAACATCAGATACTTAGCTTCCTGTGGTATACTGATGAACAGAACTCTTCCAC
TGCATTCCTCATTTTTGCCTAAGGAGATATATGCAAGAACCTTCTTCAGAATTGCTGCAC
CATTAATAAACAAAAGAAAAGAATATTCAGAGAGGAGAATTATAGGATATTCTATGCAGG
AAATGTATGACGTAGTATCGGGAATGGAAGATTACAAGCATTTTGTGCCTTGGTGCAAAA
AATCAGATGTAATATCAAGGAGATCTGGATACTGCAAAACACGATTAGAAATTGGGTTTC
CACCCGTATTGGAGCGCTATACGTCAGTAGTAACCTTGGTGAAACCACATTTGGTAAAGG
CATCCTGTACAGATGGGAAGCTCTTTAATCACTTAGAGACTGTTTGGCGTTTTAGCCCAG
GTCTTCCTGGCTACCCAAGAACTTGTACTTTGGATTTTTCAATTTCTTTTGAATTTCGAT
CACTTCTGCACT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55614442|ref|XP_516007.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55614442|ref|XP_516007.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               154-607, gnl|bosTau2|chr15 (5877979-5877525)
               

               
               154-607, gnl|Hg17|chr5 (82612123-82611630)
               

               
               154-607, gnl|Mm7|chr8 (79737598-79737145)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               154-607, gnl|bosTau2|chr15 (5877979-5877525)
               

               
               154-607, gnl|Hg17|chr5 (82612123-82611630)
               

               
               154-607, gnl|Mm7|chr8 (79737598-79737145)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cty (0.31224)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               pla (0.267344)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               ski (0.146735)
               

               
               cst (0.140036)
               

               
               che (0.136314)
               

               
               nmm (0.132802)
               

               
               clu (0.119646)
               

               
               ldo (0.0970026)

	154-607, gnl\|bosTau2\|chr15 (5877979-5877525)
	154-607, gnl\|Hg17\|chr5 (82612123-82611630)
	154-607, gnl\|Mm7\|chr8 (79737598-79737145)

	cty (0.31224)
	pla (0.267344)
	fty (0.17584)
	sin (0.174948)
	ski (0.146735)
	cst (0.140036)
	che (0.136314)
	nmm (0.132802)
	clu (0.119646)
	ldo (0.0970026)