Non-Coding RNA Search

Ss1.1-rpigcb_18057.5

Sequence:


               
               GCCGCCACCATGTCCGCCTCCGCTGTCTTCATCCTCGACGTTAAGGGCAAGCCCTTGATC
AGCCGCAACTACAAGGGCGACGTGGCCATGAGCGAGATCGAGCACTTCATGCCTTTGCTT
ATGCAGCGGGAGGAGGAGGGTGCCCTGGCCCCACTGCTGAGCCATGGCCGGGTCCACTTC
TTGTGGATCAAATACAGCAACCTCTACTTGGTGGCCACCACCCTGAAGAATGCCAACGCC
TCTCTTGTGTACTCCTTCCTGTACAAGACAGTGGAGGTATTCTCTGAATACTTCAAGGAG
CTGGAGGAGGAGAGTATCAGAGACAACTTTGTTATCATCTACGAGCTGCTGGATGAGCTC
ATGGACTTTGGCTTCCCCCAGACCACTGACAGCAAAATCCTGCAGGAGTACATCACGCAG
CAGGGCAACAAGCTGGAGACTGGCAAGTCGCGTGTGCCGCCCACTGTCACCAATGCTGTG
TCCTGGCGCTCAGAGGGCATAAAGTACAAGAAGAACGAGGTCTTCATCGATGTCATAGAG
TCAGTCAACCTACTGGTCAACGCCAATGGCAGTGTCCTGCTGAGTGAGATCGTGGGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCACCATGTCCGCCTCCGCTGTCTTCATCCTCGACGTTAAGGGCAAGCCCTTGATC
AGCCGCAACTACAAGGGCGACGTGGCCATGAGCGAGATCGAGCACTTCATGCCTTTGCTT
ATGCAGCGGGAGGAGGAGGGTGCCCTGGCCCCACTGCTGAGCCATGGCCGGGTCCACTTC
TTGTGGATCAAATACAGCAACCTCTACTTGGTGGCCACCACCCTGAAGAATGCCAACGCC
TCTCTTGTGTACTCCTTCCTGTACAAGACAGTGGAGGTATTCTCTGAATACTTCAAGGAG
CTGGAGGAGGAGAGTATCAGAGACAACTTTGTTATCATCTACGAGCTGCTGGATGAGCTC
ATGGACTTTGGCTTCCCCCAGACCACTGACAGCAAAATCCTGCAGGAGTACATCACGCAG
CAGGGCAACAAGCTGGAGACTGGCAAGTCGCGTGTGCCGCCCACTGTCACCAATGCTGTG
TCCTGGCGCTCAGAGGGCATAAAGTACAAGAAGAACGAGGTCTTCATCGATGTCATAGAG
TCAGTCAACCTACTGGTCAACGCCAATGGCAGTGTCCTGCTGAGTGAGATCGTGGGCACC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               50-208, gnl|bosTau2|chr7 (10940439-10940281)
               

               
               50-208, gnl|Hg17|chr19 (10555748-10555590)
               

               
               50-208, gnl|Mm7|chr9 (21186352-21186194)
               


               
               399-557, gnl|bosTau2|chr7 (10937779-10937622)
               

               
               399-557, gnl|Hg17|chr19 (10553317-10553161)
               

               
               399-557, gnl|Mm7|chr9 (21182196-21182049)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-208, gnl|bosTau2|chr7 (10940439-10940281)
               

               
               50-208, gnl|Hg17|chr19 (10555748-10555590)
               

               
               50-208, gnl|Mm7|chr9 (21186352-21186194)
               


               
               399-557, gnl|bosTau2|chr7 (10937779-10937622)
               

               
               399-557, gnl|Hg17|chr19 (10553317-10553161)
               

               
               399-557, gnl|Mm7|chr9 (21182196-21182049)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               cty (0.31224)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)

	50-208, gnl\|bosTau2\|chr7 (10940439-10940281)
	50-208, gnl\|Hg17\|chr19 (10555748-10555590)
	50-208, gnl\|Mm7\|chr9 (21186352-21186194)

	399-557, gnl\|bosTau2\|chr7 (10937779-10937622)
	399-557, gnl\|Hg17\|chr19 (10553317-10553161)
	399-557, gnl\|Mm7\|chr9 (21182196-21182049)