Ss1.1-rpigcb_18080.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTGTTGACGCCAGAGCTGGCGTGGGTGGAGCGGTTGGTAAACAGCAAATGCCGGAAC TGAAGCGTCGGGGTCAGCGATGGACTGGAAAGAAATTCTGCGCCGGCGGTTAGCGATGCC CAACACCGGTCCAAACAAAAAAAAAACTGAACAAGAATTAAAAGATGAAGAAATGGATTT ATTTACCAAATATTATTCAGAATGGAAAGGAGATAGAAAAAACACAAATGAATTCTATAA GACCATACCCCGGTTTTATTACAGGCTGCCAGCTGAAGATGAAGTCTTACTACAGAAATT AAGAGAGGAGTCCAGAGCTGTCTTTCTGCAAAGGAAAAGCAGAGAACTCTTAGATAATGA AGAATTACAGAACTTGTGGTTTTTGCTGGACAAGCACCAGACACCACCCATGATTGGAGA GGAAGCAATGATTAATTACGAAAATTTTTTGAAGGTTGGTGAAAAGGCTGGACCAAAGTG CAAGCAATTTTTCACAGCAAAAGTTTTTGCTAAACTCCTTCATACAGATTCCTATGGAAG AATTTCCATCATGCAGTTCTTTAATTATGTCATGAGAAAAGTTTGGCTTCATCAAACAAG AATAGGACTCAGCTTATATGATGTTGCTGGTCAAGGGTATCTTCGGGAGTCTGATTTAGA AAACTACATATTGGAACTTATCCCTACTTTACCACAGTTAGATGGGCTGGAAAAATCTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTGTTGACGCCAGAGCTGGCGTGGGTGGAGCGGTTGGTAAACAGCAAATGCCGGAAC TGAAGCGTCGGGGTCAGCGATGGACTGGAAAGAAATTCTGCGCCGGCGGTTAGCGATGCC CAACACCGGTCCAAACAAAAAAAAAACTGAACAAGAATTAAAAGATGAAGAAATGGATTT ATTTACCAAATATTATTCAGAATGGAAAGGAGATAGAAAAAACACAAATGAATTCTATAA GACCATACCCCGGTTTTATTACAGGCTGCCAGCTGAAGATGAAGTCTTACTACAGAAATT AAGAGAGGAGTCCAGAGCTGTCTTTCTGCAAAGGAAAAGCAGAGAACTCTTAGATAATGA AGAATTACAGAACTTGTGGTTTTTGCTGGACAAGCACCAGACACCACCCATGATTGGAGA GGAAGCAATGATTAATTACGAAAATTTTTTGAAGGTTGGTGAAAAGGCTGGACCAAAGTG CAAGCAATTTTTCACAGCAAAAGTTTTTGCTAAACTCCTTCATACAGATTCCTATGGAAG AATTTCCATCATGCAGTTCTTTAATTATGTCATGAGAAAAGTTTGGCTTCATCAAACAAG AATAGGACTCAGCTTATATGATGTTGCTGGTCAAGGGTATCTTCGGGAGTCTGATTTAGA AAACTACATATTGGAACTTATCCCTACTTTACCACAGTTAGATGGGCTGGAAAAATCTTT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-137, gnl|bosTau2|chr21 (29859293-29859156) | |
| 1-137, gnl|canFam2|chr8 (16889325-16889572) | |
| 1-137, gnl|dasNov1|scaffold_28121 (5028-4772) | |
| 1-137, gnl|echTel1|scaffold_208813 (4014-4260) | |
| 1-137, gnl|galGal2|chr5 (32991497-32991740) | |
| 1-137, gnl|hg17|chr14 (34660767-34661023) | |
| 1-137, gnl|Hg17|chr14 (34660995-34660859) | |
| 1-137, gnl|loxAfr1|scaffold_11315 (48303-48044) | |
| 1-137, gnl|mm7|chr12 (53228538-53228795) | |
| 1-137, gnl|Mm7|chr12 (53228767-53228629) | |
| 1-137, gnl|oryCun1|scaffold_205247 (40690-40979) | |
| 1-137, gnl|panTro1|chr15 (33814152-33814408) | |
| 1-137, gnl|rheMac2|chr7 (98080785-98081041) | |
| 1-137, gnl|rn3|chr6 (75542111-75542368) | |
| 138-265, gnl|bosTau2|chr21 (29854384-29854257) | |
| 138-265, gnl|canFam2|chr8 (16884996-16885133) | |
| 138-265, gnl|danRer3|chr17 (6407349-6407481) | |
| 138-265, gnl|dasNov1|scaffold_130620 (2200-2062) | |
| 138-265, gnl|echTel1|scaffold_34836 (593-459) | |
| 138-265, gnl|fr1|chrUn (158073926-158073797) | |
| 138-265, gnl|galGal2|chr5 (32990923-32991058) | |
| 138-265, gnl|hg17|chr14 (34655561-34655698) | |
| 138-265, gnl|Hg17|chr14 (34655694-34655567) | |
| 138-265, gnl|loxAfr1|scaffold_68359 (4229-4092) | |
| 138-265, gnl|mm7|chr12 (53224923-53225060) | |
| 138-265, gnl|Mm7|chr12 (53225056-53224929) | |
| 138-265, gnl|monDom2|scaffold_73 (3159250-3159113) | |
| 138-265, gnl|oryCun1|scaffold_203543 (79093-78956) | |
| 138-265, gnl|panTro1|chr15 (33808933-33809070) | |
| 138-265, gnl|rheMac2|chr7 (98075895-98076032) | |
| 138-265, gnl|rn3|chr6 (75538331-75538468) | |
| 138-265, gnl|tetNig1|chr10 (2372135-2372264) | |
| 138-265, gnl|xenTro1|scaffold_117 (816478-816349) | |
| 369-487, gnl|bosTau2|chr21 (29849904-29849786) | |
| 369-487, gnl|canFam2|chr8 (16881939-16882081) | |
| 369-487, gnl|danRer3|chr17 (6405902-6406013) | |
| 369-487, gnl|dasNov1|scaffold_181330 (1462-1589) | |
| 369-487, gnl|echTel1|scaffold_312729 (43457-43315) | |
| 369-487, gnl|fr1|chrUn (158074559-158074428) | |
| 369-487, gnl|galGal2|chr5 (32988929-32989051) | |
| 369-487, gnl|hg17|chr14 (34648749-34648891) | |
| 369-487, gnl|Hg17|chr14 (34648890-34648772) | |
| 369-487, gnl|mm7|chr12 (53223786-53223928) | |
| 369-487, gnl|Mm7|chr12 (53223927-53223809) | |
| 369-487, gnl|monDom2|scaffold_73 (3161058-3160929) | |
| 369-487, gnl|oryCun1|scaffold_9502 (2822-2964) | |
| 369-487, gnl|panTro1|chr15 (33802129-33802271) | |
| 369-487, gnl|rheMac2|chr7 (98067388-98067530) | |
| 369-487, gnl|rn3|chr6 (75537159-75537299) | |
| 369-487, gnl|tetNig1|chr10 (2371681-2371800) | |
| 369-487, gnl|xenTro1|scaffold_117 (817147-817028) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-137, gnl|bosTau2|chr21 (29859293-29859156) | |
| 1-137, gnl|canFam2|chr8 (16889325-16889572) | |
| 1-137, gnl|dasNov1|scaffold_28121 (5028-4772) | |
| 1-137, gnl|echTel1|scaffold_208813 (4014-4260) | |
| 1-137, gnl|galGal2|chr5 (32991497-32991740) | |
| 1-137, gnl|hg17|chr14 (34660767-34661023) | |
| 1-137, gnl|Hg17|chr14 (34660995-34660859) | |
| 1-137, gnl|loxAfr1|scaffold_11315 (48303-48044) | |
| 1-137, gnl|mm7|chr12 (53228538-53228795) | |
| 1-137, gnl|Mm7|chr12 (53228767-53228629) | |
| 1-137, gnl|oryCun1|scaffold_205247 (40690-40979) | |
| 1-137, gnl|panTro1|chr15 (33814152-33814408) | |
| 1-137, gnl|rheMac2|chr7 (98080785-98081041) | |
| 1-137, gnl|rn3|chr6 (75542111-75542368) | |
| 138-265, gnl|bosTau2|chr21 (29854384-29854257) | |
| 138-265, gnl|canFam2|chr8 (16884996-16885133) | |
| 138-265, gnl|danRer3|chr17 (6407349-6407481) | |
| 138-265, gnl|dasNov1|scaffold_130620 (2200-2062) | |
| 138-265, gnl|echTel1|scaffold_34836 (593-459) | |
| 138-265, gnl|fr1|chrUn (158073926-158073797) | |
| 138-265, gnl|galGal2|chr5 (32990923-32991058) | |
| 138-265, gnl|hg17|chr14 (34655561-34655698) | |
| 138-265, gnl|Hg17|chr14 (34655694-34655567) | |
| 138-265, gnl|loxAfr1|scaffold_68359 (4229-4092) | |
| 138-265, gnl|mm7|chr12 (53224923-53225060) | |
| 138-265, gnl|Mm7|chr12 (53225056-53224929) | |
| 138-265, gnl|monDom2|scaffold_73 (3159250-3159113) | |
| 138-265, gnl|oryCun1|scaffold_203543 (79093-78956) | |
| 138-265, gnl|panTro1|chr15 (33808933-33809070) | |
| 138-265, gnl|rheMac2|chr7 (98075895-98076032) | |
| 138-265, gnl|rn3|chr6 (75538331-75538468) | |
| 138-265, gnl|tetNig1|chr10 (2372135-2372264) | |
| 138-265, gnl|xenTro1|scaffold_117 (816478-816349) | |
| 369-487, gnl|bosTau2|chr21 (29849904-29849786) | |
| 369-487, gnl|canFam2|chr8 (16881939-16882081) | |
| 369-487, gnl|danRer3|chr17 (6405902-6406013) | |
| 369-487, gnl|dasNov1|scaffold_181330 (1462-1589) | |
| 369-487, gnl|echTel1|scaffold_312729 (43457-43315) | |
| 369-487, gnl|fr1|chrUn (158074559-158074428) | |
| 369-487, gnl|galGal2|chr5 (32988929-32989051) | |
| 369-487, gnl|hg17|chr14 (34648749-34648891) | |
| 369-487, gnl|Hg17|chr14 (34648890-34648772) | |
| 369-487, gnl|mm7|chr12 (53223786-53223928) | |
| 369-487, gnl|Mm7|chr12 (53223927-53223809) | |
| 369-487, gnl|monDom2|scaffold_73 (3161058-3160929) | |
| 369-487, gnl|oryCun1|scaffold_9502 (2822-2964) | |
| 369-487, gnl|panTro1|chr15 (33802129-33802271) | |
| 369-487, gnl|rheMac2|chr7 (98067388-98067530) | |
| 369-487, gnl|rn3|chr6 (75537159-75537299) | |
| 369-487, gnl|tetNig1|chr10 (2371681-2371800) | |
| 369-487, gnl|xenTro1|scaffold_117 (817147-817028) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| spl (0.286369) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| ste (0.135208) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| ldo (0.0970026) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.286369) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| ski (0.146735) | |
| liv (0.146284) | |
| ste (0.135208) | |
| pgl (0.118483) | |
| cty (0.10408) | |
| ldo (0.0970026) |