Non-Coding RNA Search

Ss1.1-rpigcb_18133.5

Sequence:


               
               ATCTTAGAAATGGCGGCTCCGCTGGGTGGAATGTTCACTGGGCAGCCTCCCGGGCCTCCG
CCGCCGCCGCCGGGGCTCCTGGGCCAGGCTTCGCTTCTTCAGGCCACACCAGGTATTCCA
AGAACTTCTAACAGCACCTTAGTGGACGAGTTGGAGTCATCTTTCGAGGCTTGTTTTGCT
TCTCTTGTGAGTCAGGACTATGTCAATGGTACAGATCAGGAAGAAATTCGAACTGGTGTC
GATCAGTGTATCCAGAAATTTCTAGATATTGCAAGACAGACAGAATGTTTTTTCCTACAA
AAAAGATTGCAGTTATCTGTCCAGAAACCAGAGCAAGTTATCAAAGAGGATGTCTCAGAA
CTAAGGAACGAGTTACAGCGGAAGGATGCTCTGGTCCAGAAGCACTTGACCAAACTGAGG
CATTGGCAGCAGGTGCTGGAGGACATCAATGTACAGCACAAGAAACCGGCCGACCTCCCC
CAGGGCTCTCTGGCCTACCTGGAGCAGGCGTCTGCCAACATCCCTGCACCCATGAAACAA
AGCTGAGGCCAGGCCAGCCTGGGAGTGCACTGGCGGACAAGTCGGCCCAGATGGTTTGCC
AGACATCACTTTTTATAGACGTGACATTTGGGAGAACTCTTTGCCAGAGAATGAGATGAG
TTTAGTTTCATGCTCTCACCTAAAATTTTTCCTGTTTTTATAAGCACTATTTCTTGAGTA
CTTTATGAAATGCCTATCGCTTTGGTAAACTAAGTATATCGTCTTTGCTAAAGTTAGACT
GTTGGTATGATGTCACAGATTCCTTTTGATGTGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTAGAAATGGCGGCTCCGCTGGGTGGAATGTTCACTGGGCAGCCTCCCGGGCCTCCG
CCGCCGCCGCCGGGGCTCCTGGGCCAGGCTTCGCTTCTTCAGGCCACACCAGGTATTCCA
AGAACTTCTAACAGCACCTTAGTGGACGAGTTGGAGTCATCTTTCGAGGCTTGTTTTGCT
TCTCTTGTGAGTCAGGACTATGTCAATGGTACAGATCAGGAAGAAATTCGAACTGGTGTC
GATCAGTGTATCCAGAAATTTCTAGATATTGCAAGACAGACAGAATGTTTTTTCCTACAA
AAAAGATTGCAGTTATCTGTCCAGAAACCAGAGCAAGTTATCAAAGAGGATGTCTCAGAA
CTAAGGAACGAGTTACAGCGGAAGGATGCTCTGGTCCAGAAGCACTTGACCAAACTGAGG
CATTGGCAGCAGGTGCTGGAGGACATCAATGTACAGCACAAGAAACCGGCCGACCTCCCC
CAGGGCTCTCTGGCCTACCTGGAGCAGGCGTCTGCCAACATCCCTGCACCCATGAAACAA
AGCTGAGGCCAGGCCAGCCTGGGAGTGCACTGGCGGACAAGTCGGCCCAGATGGTTTGCC
AGACATCACTTTTTATAGACGTGACATTTGGGAGAACTCTTTGCCAGAGAATGAGATGAG
TTTAGTTTCATGCTCTCACCTAAAATTTTTCCTGTTTTTATAAGCACTATTTCTTGAGTA
CTTTATGAAATGCCTATCGCTTTGGTAAACTAAGTATATCGTCTTTGCTAAAGTTAGACT
GTTGGTATGATGTCACAGATTCCTTTTGATGTGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15080367|gb|AAH11936.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15080367|gb|AAH11936.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               215-324, - strand, RNAz p=0.996357

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-324, - strand, RNAz p=0.996357

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-703, gnl|bosTau2|chr22 (28157139-28156447)
               

               
               16-703, gnl|Hg17|chr2 (187054837-187055539)
               

               
               16-703, gnl|Mm7|chr5 (44842593-44847701)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-703, gnl|bosTau2|chr22 (28157139-28156447)
               

               
               16-703, gnl|Hg17|chr2 (187054837-187055539)
               

               
               16-703, gnl|Mm7|chr5 (44842593-44847701)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nje (0.16592)
               

               
               spl (0.143184)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               spl (0.143184)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	16-703, gnl\|bosTau2\|chr22 (28157139-28156447)
	16-703, gnl\|Hg17\|chr2 (187054837-187055539)
	16-703, gnl\|Mm7\|chr5 (44842593-44847701)