Non-Coding RNA Search

Ss1.1-rpigcb_18161.5

Sequence:


               
               GCTTCCCCCCAAACCACCACCCTGCTGCTGCCCAGAGCTCTCACGGAGGGGGTGGCGTGG
GACCACTCCAGGCGGGACAGAGCAGCCCTGTTGCTGTGGAGAGACTGAGCCAACAGTTTA
AGTCCAGCTCATTTCAGTTGATGTCAACTCGCAACATCCAGTTCAGGGGCCCTTGGGATA
ATCCTGACAACTCGGGGCTGTCGGTTAGATTTTACATTTGATTGAACCGTAATAGCACTG
CAGACACCTAGAAATAATTGCTTACGGAGTTTCTTCTTGCCCTCAGTTGGGCAGTAGAGG
GGTGGGACGAGGTTTTGTTTTTCAGATGACCGAAGTGCTATGAATGCAAGCTGCTGCATT
TTTAAACAACAGAACGCACTGCGGAGGGGCCAGGAGCCCCCTCAGGTCCACAGCAGCATC
ACTTGAAAGCCAGAACCTCAGAGGCCACCCACTCCCTGACTTAGCCACCTCCCGAACCCC
CTCCTTAGTAAAGCAGCCTCCTGCGAGAGCGGGTTTCTGCCACGCCCAGCCTGTCCCCAG
AGGAAGATTCTGTCATTCCTCAAACACTCTTCACTGATAATTAGGAGAGGGAGTTTCTGG
ATTAGCTTTCCCTGTTTTGGATGAAGAGAGGCTGAAATGAGAACAATCAGAATTGTGCTT
TTTCTTCCCCCCTCTATTCCTTTTAGGAAATAATGTTGAATCCAGTGCTGCCTGATTGCA
TTGCTACCATTCAGTTTCTTGTTTCCGTTCTAACCCTTGCTATCAAGAATTTAAGACTTG
TTCTTATATTACCTTTGACCTGGAGTGAATTTATTTACATATTTTTCAGGATCCTTGCAG
CTTTTTTTGTTGTCTTTTTTAAATTGCTGTCTCATAAACACATGTATACCGATTTATGGA
AGTTTATTTACACTCCTCTATCATGCAAAAGTATTTTTTGACTTTTTACTACTAAGTAGC
TTAATTTTTAAAAACGAAATCTATAGGGTTGAAAAAATGCCGTTGCTCTCTGCATTAAGA
GTTTCTCTTGTGAGTCTGATGTGCAGCAGCTTTCTTCTGTGCTGATGATGGCTGCTTTGT
TCTGGTGTGAGCTGTGAAGAGTTGAAAACAGCTTCCCATGCAGGTACATCTAGCCTAAAA
CCTCCAGTACGTGGGCACTGAATTGGGGCAAGTCTTAAATATGTGCATGTAGTTGAGTTT
TAGTCCTTACGGGTAGGCACGATTAGGCCTAGCTTTCTAGTCCCACAGCCTAAGAAATAA
GAAACACTCATGGGAATGCATTTAGCAATCCAAGAAAACATTTGCTTCAACCTGGAACAT
CTCACTTTTTTAAATCCTAAAGAACACTGGCAATTATATTTTAGGTTAGTTTTTATTTTT
CAGGTGGTTTTAACAAAATGCTTTCATTGATGGGTTAGGACCCACATTAAAACCTAAAAA
TAAAAAAAACCAGTTTTTGTCTCCATGGAACAAATGGAATTAAATTTAATGATAACTAAA
GTCCTTTTTTAATTTCTCATTTAAATTTCTTATTTACATGTTTGTTTTTTCATGAGGTAT
TTCTTTTAAAAGCCCCAATCTTGCCTAGGAAATATAAAAGCAAAAGTTGATTTTGCTTAT
TTGCTTAAGTGTTTAGTGTTTGTAGCTCTTTTAATTAGAGCATGACTCCAGTGAGGCTAA
GATTGAAATTAGATCCTTGGAGTTCCCTTTGTGGCTCAGTGGTCAATGAACCCAACTAGC
ATCCATGAGGACATGGATTCTATCCCTGGCCTGGCTCAGGGGGTTAAGGATCCAGTGTTG
CCATGAGCTGTGGTGTAGGTCACAGACACAGCTTGGATCCTGTGCTGCTGTGGCTGTGGT
GTAGGCCAGTGGCTGCAGCTCCGATTAGACCCCTAACCTGGCAACTTCCATATGCTGTGG
GTACAGCTCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCCCCCCAAACCACCACCCTGCTGCTGCCCAGAGCTCTCACGGAGGGGGTGGCGTGG
GACCACTCCAGGCGGGACAGAGCAGCCCTGTTGCTGTGGAGAGACTGAGCCAACAGTTTA
AGTCCAGCTCATTTCAGTTGATGTCAACTCGCAACATCCAGTTCAGGGGCCCTTGGGATA
ATCCTGACAACTCGGGGCTGTCGGTTAGATTTTACATTTGATTGAACCGTAATAGCACTG
CAGACACCTAGAAATAATTGCTTACGGAGTTTCTTCTTGCCCTCAGTTGGGCAGTAGAGG
GGTGGGACGAGGTTTTGTTTTTCAGATGACCGAAGTGCTATGAATGCAAGCTGCTGCATT
TTTAAACAACAGAACGCACTGCGGAGGGGCCAGGAGCCCCCTCAGGTCCACAGCAGCATC
ACTTGAAAGCCAGAACCTCAGAGGCCACCCACTCCCTGACTTAGCCACCTCCCGAACCCC
CTCCTTAGTAAAGCAGCCTCCTGCGAGAGCGGGTTTCTGCCACGCCCAGCCTGTCCCCAG
AGGAAGATTCTGTCATTCCTCAAACACTCTTCACTGATAATTAGGAGAGGGAGTTTCTGG
ATTAGCTTTCCCTGTTTTGGATGAAGAGAGGCTGAAATGAGAACAATCAGAATTGTGCTT
TTTCTTCCCCCCTCTATTCCTTTTAGGAAATAATGTTGAATCCAGTGCTGCCTGATTGCA
TTGCTACCATTCAGTTTCTTGTTTCCGTTCTAACCCTTGCTATCAAGAATTTAAGACTTG
TTCTTATATTACCTTTGACCTGGAGTGAATTTATTTACATATTTTTCAGGATCCTTGCAG
CTTTTTTTGTTGTCTTTTTTAAATTGCTGTCTCATAAACACATGTATACCGATTTATGGA
AGTTTATTTACACTCCTCTATCATGCAAAAGTATTTTTTGACTTTTTACTACTAAGTAGC
TTAATTTTTAAAAACGAAATCTATAGGGTTGAAAAAATGCCGTTGCTCTCTGCATTAAGA
GTTTCTCTTGTGAGTCTGATGTGCAGCAGCTTTCTTCTGTGCTGATGATGGCTGCTTTGT
TCTGGTGTGAGCTGTGAAGAGTTGAAAACAGCTTCCCATGCAGGTACATCTAGCCTAAAA
CCTCCAGTACGTGGGCACTGAATTGGGGCAAGTCTTAAATATGTGCATGTAGTTGAGTTT
TAGTCCTTACGGGTAGGCACGATTAGGCCTAGCTTTCTAGTCCCACAGCCTAAGAAATAA
GAAACACTCATGGGAATGCATTTAGCAATCCAAGAAAACATTTGCTTCAACCTGGAACAT
CTCACTTTTTTAAATCCTAAAGAACACTGGCAATTATATTTTAGGTTAGTTTTTATTTTT
CAGGTGGTTTTAACAAAATGCTTTCATTGATGGGTTAGGACCCACATTAAAACCTAAAAA
TAAAAAAAACCAGTTTTTGTCTCCATGGAACAAATGGAATTAAATTTAATGATAACTAAA
GTCCTTTTTTAATTTCTCATTTAAATTTCTTATTTACATGTTTGTTTTTTCATGAGGTAT
TTCTTTTAAAAGCCCCAATCTTGCCTAGGAAATATAAAAGCAAAAGTTGATTTTGCTTAT
TTGCTTAAGTGTTTAGTGTTTGTAGCTCTTTTAATTAGAGCATGACTCCAGTGAGGCTAA
GATTGAAATTAGATCCTTGGAGTTCCCTTTGTGGCTCAGTGGTCAATGAACCCAACTAGC
ATCCATGAGGACATGGATTCTATCCCTGGCCTGGCTCAGGGGGTTAAGGATCCAGTGTTG
CCATGAGCTGTGGTGTAGGTCACAGACACAGCTTGGATCCTGTGCTGCTGTGGCTGTGGT
GTAGGCCAGTGGCTGCAGCTCCGATTAGACCCCTAACCTGGCAACTTCCATATGCTGTGG
GTACAGCTCTAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               312-427, - strand, RNAz p=0.995114
               

               
               1369-1476, - strand, RNAz p=0.983965
               

               
               1578-1697, - strand, RNAz p=0.677699

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               312-427, - strand, RNAz p=0.995114
               

               
               1369-1476, - strand, RNAz p=0.983965
               

               
               1578-1697, - strand, RNAz p=0.677699

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-1697, gnl|bosTau2|chr23 (7345944-7347626)
               

               
               1-1697, gnl|Hg17|chr6 (35651451-35649737)
               


               
               6-219, gnl|bosTau2|chr21 (40798263-40798476)
               

               
               6-219, gnl|Hg17|chr6 (35651431-35651236)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1697, gnl|bosTau2|chr23 (7345944-7347626)
               

               
               1-1697, gnl|Hg17|chr6 (35651451-35649737)
               


               
               6-219, gnl|bosTau2|chr21 (40798263-40798476)
               

               
               6-219, gnl|Hg17|chr6 (35651431-35651236)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

Help | Less info


               
               mcp (0.511945)
               

               
               med (0.348756)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.511945)
               

               
               med (0.348756)
               

               
               cty (0.20816)
               

               
               col (0.195008)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               cje (0.165235)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               kid (0.129735)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	312-427, - strand, RNAz p=0.995114
	1369-1476, - strand, RNAz p=0.983965
	1578-1697, - strand, RNAz p=0.677699

	1-1697, gnl\|bosTau2\|chr23 (7345944-7347626)
	1-1697, gnl\|Hg17\|chr6 (35651451-35649737)

	6-219, gnl\|bosTau2\|chr21 (40798263-40798476)
	6-219, gnl\|Hg17\|chr6 (35651431-35651236)

	mcp (0.511945)
	med (0.348756)
	cty (0.20816)
	col (0.195008)
	ton (0.1755)
	duo (0.172801)
	cje (0.165235)
	tbr (0.154178)
	spl (0.143184)
	hyp (0.142837)
	lnt (0.142308)
	cst (0.140036)
	pla (0.133672)
	kid (0.129735)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	eru (0.120048)
	jej (0.0989218)
	ldo (0.0970026)