Non-Coding RNA Search

Ss1.1-rpigcb_2126.5

Sequence:


               
               ACTCCCAGCTGGCAGCCCGCAGCATGGATTCGGATTCGGGCGAGCAGAGCGAGGGCGAGC
CCGGGACCGCTGCAGGTCCTGATGTTTTTAGTTCAAAGAGCCTTGCCCTTCAAGCCCAGA
AGAAGATTCTGAGCAAAATAGCCAGCAAAACTGTGGCCAACATGCTGATTGATGACACCA
GCAGCGAGATCTTTGATGAGCTCTACAAAGTCACCAAAGAGCACACCCACAGCAAGAAGG
AAGCACACAAGATCATGAAAGACCTAATCAAGGTGGCGATCAAAATTGGGATCCTCTACC
GGAACAACCAGTTCAGCCAGGAGGAGGTGATTATTGTGGAGAAGTTCAGGAAGAAGCTGA
ATCAGACTGCCATGACCATTGTTAGCTTCTACGAGGGTGGAATACACCTTCGATAGGAAT
GTGCTCTCCAAGCTCCTACACGAATGCAAGGACCTGGTACATGAACTGGTACAGCGACAT
CTGACGCCCAGGAGCCATGGGCGCATCAACCACGTCTTCAACCACTTTGCTGACATGGAG
TTCCTCTCCAACCTTTATAGTCTGGATGGGGACTGTAGGCCAAACCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCCAGCTGGCAGCCCGCAGCATGGATTCGGATTCGGGCGAGCAGAGCGAGGGCGAGC
CCGGGACCGCTGCAGGTCCTGATGTTTTTAGTTCAAAGAGCCTTGCCCTTCAAGCCCAGA
AGAAGATTCTGAGCAAAATAGCCAGCAAAACTGTGGCCAACATGCTGATTGATGACACCA
GCAGCGAGATCTTTGATGAGCTCTACAAAGTCACCAAAGAGCACACCCACAGCAAGAAGG
AAGCACACAAGATCATGAAAGACCTAATCAAGGTGGCGATCAAAATTGGGATCCTCTACC
GGAACAACCAGTTCAGCCAGGAGGAGGTGATTATTGTGGAGAAGTTCAGGAAGAAGCTGA
ATCAGACTGCCATGACCATTGTTAGCTTCTACGAGGGTGGAATACACCTTCGATAGGAAT
GTGCTCTCCAAGCTCCTACACGAATGCAAGGACCTGGTACATGAACTGGTACAGCGACAT
CTGACGCCCAGGAGCCATGGGCGCATCAACCACGTCTTCAACCACTTTGCTGACATGGAG
TTCCTCTCCAACCTTTATAGTCTGGATGGGGACTGTAGGCCAAACCTC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|34528785|dbj|BAC85572.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|34528785|dbj|BAC85572.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               113-232, - strand, RNAz p=0.994035
               

               
               433-588, - strand, RNAz p=0.689569

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               113-232, - strand, RNAz p=0.994035
               

               
               433-588, - strand, RNAz p=0.689569

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               74-588, gnl|bosTau2|chr3 (15980650-15981163)
               

               
               74-588, gnl|canFam2|chr30 (19814230-19814816)
               

               
               74-588, gnl|danRer3|chrNA (245955525-245956094)
               

               
               74-588, gnl|dasNov1|scaffold_4219 (40016-39430)
               

               
               74-588, gnl|echTel1|scaffold_246046 (4867-4268)
               

               
               74-588, gnl|fr1|chrUn (145355183-145355767)
               

               
               74-588, gnl|galGal2|chr10 (9727793-9728360)
               

               
               74-588, gnl|hg17|chr15 (49137354-49137940)
               

               
               74-588, gnl|Hg17|chr15 (49137934-49137421)
               

               
               74-588, gnl|loxAfr1|scaffold_18052 (32294-32880)
               

               
               74-588, gnl|mm7|chr9 (54057531-54058118)
               

               
               74-588, gnl|Mm7|chr9 (54058112-54057599)
               

               
               74-588, gnl|monDom2|scaffold_12 (17357300-17356714)
               

               
               74-588, gnl|oryCun1|scaffold_201604 (7013-7599)
               

               
               74-588, gnl|panTro1|chr16 (49169264-49169850)
               

               
               74-588, gnl|rheMac2|chr7 (29361441-29362027)
               

               
               74-588, gnl|rn3|chr8 (57529354-57529937)
               

               
               74-588, gnl|tetNig1|chr5 (9825228-9825797)
               

               
               74-588, gnl|xenTro1|scaffold_27 (1461645-1462225)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-588, gnl|bosTau2|chr3 (15980650-15981163)
               

               
               74-588, gnl|canFam2|chr30 (19814230-19814816)
               

               
               74-588, gnl|danRer3|chrNA (245955525-245956094)
               

               
               74-588, gnl|dasNov1|scaffold_4219 (40016-39430)
               

               
               74-588, gnl|echTel1|scaffold_246046 (4867-4268)
               

               
               74-588, gnl|fr1|chrUn (145355183-145355767)
               

               
               74-588, gnl|galGal2|chr10 (9727793-9728360)
               

               
               74-588, gnl|hg17|chr15 (49137354-49137940)
               

               
               74-588, gnl|Hg17|chr15 (49137934-49137421)
               

               
               74-588, gnl|loxAfr1|scaffold_18052 (32294-32880)
               

               
               74-588, gnl|mm7|chr9 (54057531-54058118)
               

               
               74-588, gnl|Mm7|chr9 (54058112-54057599)
               

               
               74-588, gnl|monDom2|scaffold_12 (17357300-17356714)
               

               
               74-588, gnl|oryCun1|scaffold_201604 (7013-7599)
               

               
               74-588, gnl|panTro1|chr16 (49169264-49169850)
               

               
               74-588, gnl|rheMac2|chr7 (29361441-29362027)
               

               
               74-588, gnl|rn3|chr8 (57529354-57529937)
               

               
               74-588, gnl|tetNig1|chr5 (9825228-9825797)
               

               
               74-588, gnl|xenTro1|scaffold_27 (1461645-1462225)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.20816)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	113-232, - strand, RNAz p=0.994035
	433-588, - strand, RNAz p=0.689569

	74-588, gnl\|bosTau2\|chr3 (15980650-15981163)
	74-588, gnl\|canFam2\|chr30 (19814230-19814816)
	74-588, gnl\|danRer3\|chrNA (245955525-245956094)
	74-588, gnl\|dasNov1\|scaffold_4219 (40016-39430)
	74-588, gnl\|echTel1\|scaffold_246046 (4867-4268)
	74-588, gnl\|fr1\|chrUn (145355183-145355767)
	74-588, gnl\|galGal2\|chr10 (9727793-9728360)
	74-588, gnl\|hg17\|chr15 (49137354-49137940)
	74-588, gnl\|Hg17\|chr15 (49137934-49137421)
	74-588, gnl\|loxAfr1\|scaffold_18052 (32294-32880)
	74-588, gnl\|mm7\|chr9 (54057531-54058118)
	74-588, gnl\|Mm7\|chr9 (54058112-54057599)
	74-588, gnl\|monDom2\|scaffold_12 (17357300-17356714)
	74-588, gnl\|oryCun1\|scaffold_201604 (7013-7599)
	74-588, gnl\|panTro1\|chr16 (49169264-49169850)
	74-588, gnl\|rheMac2\|chr7 (29361441-29362027)
	74-588, gnl\|rn3\|chr8 (57529354-57529937)
	74-588, gnl\|tetNig1\|chr5 (9825228-9825797)
	74-588, gnl\|xenTro1\|scaffold_27 (1461645-1462225)