Ss1.1-rpigcb_2279.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTAAAAGCAGAAACTGACATTCTGTTTTTCTCTACTTTGGAGAGTTGAACCTAATGATCC AGTTGCCATATTGTCATATTTATCTTAATATTTATCAGTAGGTTCTCACCTGGATTAATG ATGAGCTAGTTCACTATTCACAAGGTGTACTGTACATCTCACTTAAAATATTTACATTTG TCTTTTTCTATATTAAGTGACTTCATAAGTGATGAAAAATATTTATGAAAGAGTTCTTTG TTAAGAATGTGTACCATAGCAAAGGCTTGTCTCTTAACTTTCAGATATTCTTGCTTTTGT ATTCTATGGAGAGAAAGCCTTGAGACAGACATTTGGATGTTGAGATAAAAAGGGACTGAT AAAACCTGGGATTGAAAAGGAATATGGTATCATAACTCCTTTTGATTTATATATCTTCTG TTTGAAGTGTCTATAATTGTAATACAAAAGAGTGGAAGAAATGAGTGGCTTATACTCTCC TGTCAGTGAGGATAGCACAGTGCCTCAATTTGAAGCTCCTTCTCCATCACACAGTAGTAT TATTGATTCCACAGAATACATCCAACCTCCAGGTTTCAGTGGCAGTTCTCAGACAAAGAA ACAGCCCTGGTATAACAGCACATTAGCATCAAGACGAAAACGACTCACTGCTCATTTTGA AGACTTAGAGCAATGTTACTTTTCTACAAGGATGTCTCGTATCTCAGATGACAGTCGAAC TGCAAGCCAGTTGGATGAATTTCAGGAATGCTTGTCCAAGTTTACTCGATATAATTCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTAAAAGCAGAAACTGACATTCTGTTTTTCTCTACTTTGGAGAGTTGAACCTAATGATCC AGTTGCCATATTGTCATATTTATCTTAATATTTATCAGTAGGTTCTCACCTGGATTAATG ATGAGCTAGTTCACTATTCACAAGGTGTACTGTACATCTCACTTAAAATATTTACATTTG TCTTTTTCTATATTAAGTGACTTCATAAGTGATGAAAAATATTTATGAAAGAGTTCTTTG TTAAGAATGTGTACCATAGCAAAGGCTTGTCTCTTAACTTTCAGATATTCTTGCTTTTGT ATTCTATGGAGAGAAAGCCTTGAGACAGACATTTGGATGTTGAGATAAAAAGGGACTGAT AAAACCTGGGATTGAAAAGGAATATGGTATCATAACTCCTTTTGATTTATATATCTTCTG TTTGAAGTGTCTATAATTGTAATACAAAAGAGTGGAAGAAATGAGTGGCTTATACTCTCC TGTCAGTGAGGATAGCACAGTGCCTCAATTTGAAGCTCCTTCTCCATCACACAGTAGTAT TATTGATTCCACAGAATACATCCAACCTCCAGGTTTCAGTGGCAGTTCTCAGACAAAGAA ACAGCCCTGGTATAACAGCACATTAGCATCAAGACGAAAACGACTCACTGCTCATTTTGA AGACTTAGAGCAATGTTACTTTTCTACAAGGATGTCTCGTATCTCAGATGACAGTCGAAC TGCAAGCCAGTTGGATGAATTTCAGGAATGCTTGTCCAAGTTTACTCGATATAATTCAGT |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 419-534, - strand, RNAz p=0.600933 | |
| 588-707, + strand, RNAz p=0.939959 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 419-534, - strand, RNAz p=0.600933 | |
| 588-707, + strand, RNAz p=0.939959 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 84-534, gnl|bosTau2|chr16 (43685059-43684612) | |
| 84-534, gnl|Hg17|chr1 (172836260-172835803) | |
| 84-534, gnl|Mm7|chr1 (159229869-159230268) | |
| 588-707, gnl|bosTau2|chr16 (43654488-43654369) | |
| 588-707, gnl|canFam2|chr7 (26391067-26390943) | |
| 588-707, gnl|canFam2|chr7 (26390936-26391052) | |
| 588-707, gnl|danRer3|chr2 (28200171-28200058) | |
| 588-707, gnl|danRer3|chr2 (28200051-28200164) | |
| 588-707, gnl|dasNov1|scaffold_124213 (888-764) | |
| 588-707, gnl|dasNov1|scaffold_124213 (757-873) | |
| 588-707, gnl|echTel1|scaffold_312276 (44986-45113) | |
| 588-707, gnl|echTel1|scaffold_312347 (76949-77061) | |
| 588-707, gnl|fr1|chrUn (212307178-212307054) | |
| 588-707, gnl|fr1|chrUn (212307047-212307144) | |
| 588-707, gnl|hg17|chr1 (172786557-172786681) | |
| 588-707, gnl|Hg17|chr1 (172786688-172786569) | |
| 588-707, gnl|hg17|chr18 (8403140-8403256) | |
| 588-707, gnl|mm7|chr1 (159246759-159246635) | |
| 588-707, gnl|Mm7|chr1 (159246626-159246745) | |
| 588-707, gnl|mm7|chrX (98491643-98491527) | |
| 588-707, gnl|monDom2|scaffold_16 (27735722-27735851) | |
| 588-707, gnl|monDom2|scaffold_16 (27670019-27669881) | |
| 588-707, gnl|oryCun1|scaffold_175963 (10173-10049) | |
| 588-707, gnl|oryCun1|scaffold_175963 (10042-10158) | |
| 588-707, gnl|panTro1|chr1 (155199825-155199949) | |
| 588-707, gnl|panTro1|chr17 (4282281-4282165) | |
| 588-707, gnl|rheMac2|chr1 (205691704-205691828) | |
| 588-707, gnl|rheMac2|chr18 (5943422-5943306) | |
| 588-707, gnl|tetNig1|chrUn_random (16298334-16298448) | |
| 588-707, gnl|tetNig1|chrUn_random (16298455-16298342) | |
| 588-707, gnl|xenTro1|scaffold_126 (1961255-1961141) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 84-534, gnl|bosTau2|chr16 (43685059-43684612) | |
| 84-534, gnl|Hg17|chr1 (172836260-172835803) | |
| 84-534, gnl|Mm7|chr1 (159229869-159230268) | |
| 588-707, gnl|bosTau2|chr16 (43654488-43654369) | |
| 588-707, gnl|canFam2|chr7 (26391067-26390943) | |
| 588-707, gnl|canFam2|chr7 (26390936-26391052) | |
| 588-707, gnl|danRer3|chr2 (28200171-28200058) | |
| 588-707, gnl|danRer3|chr2 (28200051-28200164) | |
| 588-707, gnl|dasNov1|scaffold_124213 (888-764) | |
| 588-707, gnl|dasNov1|scaffold_124213 (757-873) | |
| 588-707, gnl|echTel1|scaffold_312276 (44986-45113) | |
| 588-707, gnl|echTel1|scaffold_312347 (76949-77061) | |
| 588-707, gnl|fr1|chrUn (212307178-212307054) | |
| 588-707, gnl|fr1|chrUn (212307047-212307144) | |
| 588-707, gnl|hg17|chr1 (172786557-172786681) | |
| 588-707, gnl|Hg17|chr1 (172786688-172786569) | |
| 588-707, gnl|hg17|chr18 (8403140-8403256) | |
| 588-707, gnl|mm7|chr1 (159246759-159246635) | |
| 588-707, gnl|Mm7|chr1 (159246626-159246745) | |
| 588-707, gnl|mm7|chrX (98491643-98491527) | |
| 588-707, gnl|monDom2|scaffold_16 (27735722-27735851) | |
| 588-707, gnl|monDom2|scaffold_16 (27670019-27669881) | |
| 588-707, gnl|oryCun1|scaffold_175963 (10173-10049) | |
| 588-707, gnl|oryCun1|scaffold_175963 (10042-10158) | |
| 588-707, gnl|panTro1|chr1 (155199825-155199949) | |
| 588-707, gnl|panTro1|chr17 (4282281-4282165) | |
| 588-707, gnl|rheMac2|chr1 (205691704-205691828) | |
| 588-707, gnl|rheMac2|chr18 (5943422-5943306) | |
| 588-707, gnl|tetNig1|chrUn_random (16298334-16298448) | |
| 588-707, gnl|tetNig1|chrUn_random (16298455-16298342) | |
| 588-707, gnl|xenTro1|scaffold_126 (1961255-1961141) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| cty (0.10408) |