Non-Coding RNA Search

Ss1.1-rpigcb_2670.5

Sequence:


               
               GAGGCTGCATCAGAGGAAGAAGGGTTGAGTTTCTTAAATGAATATGATGAAACAAAACCA
GAACTGCCCAGTGGAAAAAAGAATCAGTCTCTTACACTGATAGAACTGCTTAAAAATAAA
AGGATGGGAGAAGAGAGGAATACTTCTGTTTCTCCTCAAAAGATCCATAGTCAGACTGCA
AGAAAGAGATTTGTTCAGAAGTGTGGTTCTTCCATTGAACGAAGATAGTCCATTGATGTA
TCAGCCACAGAAAATGGACTTCACTATGCACTCAGCCTTAGATTGTAAGCAAAAGAAATC
AAGGTCAAGATCCGGAAGCAAGAAGAAAATGCTAACGTTACCTCACGGTGCTGACGAGGT
CTACATTCTCCGATGCAGGTTTTGTGGCCTAGTCTTTCGTGGACCATTGTCTGTTCAGGA
AGACTGGATTAAGCACTTACAACGACACATTGTAAACGCTAATCTTCCACGGACTGGAGC
TGGCATGGTGGAAGTCACGTCACTACTCAAAAAGCCTGCCTCCATTACAGAAACTTCATT
TTCTCTACTAATGGCAGAAGCAGCTTCCTAGAAACAAGGAAACCTTTTAAATAGCGAATT
TGAATTGGATGTACATTTGAAATTCTTTTGTGTTTTTTTTAAAGCCACGTTAAATTATCC
GTTTGTAACTACTAAAACAGGAAAATGGGGGAAAGAGAATTACAGTGACATCAGAGCAAA
CTGAGTGCTGCAAACAGTAAGTAGCCTCTGTATTTTGTGTAGGAGGGCGATGTGTCTTTA
AGGTTTACTCAGTTGTGTCGGTTCGCTGTTGACTCACCGAAAGCTCAGTCCGTGTACACA
GTCGCTAATAACCTGTGGCACGTGGGTATTTAAAGACAGACTTATTGGAAAATGATGTTT
TCTGCAGTGTTACCAGAATCAAGGTTCTGTTTATTCCCCACAAGACTTGCATTGAAAAAT
AAGATATTATATTTTGTTTGTATATATTTAGTGTTTTGTATAATACCAGGAACTGCTAAC
TAAATTTACTCAACTTAGGGCATTAAATATCATGTACTTCATAGTTGGAGACTGTTCACT
CAAATAGGGCAGAGTACTATTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCTGCATCAGAGGAAGAAGGGTTGAGTTTCTTAAATGAATATGATGAAACAAAACCA
GAACTGCCCAGTGGAAAAAAGAATCAGTCTCTTACACTGATAGAACTGCTTAAAAATAAA
AGGATGGGAGAAGAGAGGAATACTTCTGTTTCTCCTCAAAAGATCCATAGTCAGACTGCA
AGAAAGAGATTTGTTCAGAAGTGTGGTTCTTCCATTGAACGAAGATAGTCCATTGATGTA
TCAGCCACAGAAAATGGACTTCACTATGCACTCAGCCTTAGATTGTAAGCAAAAGAAATC
AAGGTCAAGATCCGGAAGCAAGAAGAAAATGCTAACGTTACCTCACGGTGCTGACGAGGT
CTACATTCTCCGATGCAGGTTTTGTGGCCTAGTCTTTCGTGGACCATTGTCTGTTCAGGA
AGACTGGATTAAGCACTTACAACGACACATTGTAAACGCTAATCTTCCACGGACTGGAGC
TGGCATGGTGGAAGTCACGTCACTACTCAAAAAGCCTGCCTCCATTACAGAAACTTCATT
TTCTCTACTAATGGCAGAAGCAGCTTCCTAGAAACAAGGAAACCTTTTAAATAGCGAATT
TGAATTGGATGTACATTTGAAATTCTTTTGTGTTTTTTTTAAAGCCACGTTAAATTATCC
GTTTGTAACTACTAAAACAGGAAAATGGGGGAAAGAGAATTACAGTGACATCAGAGCAAA
CTGAGTGCTGCAAACAGTAAGTAGCCTCTGTATTTTGTGTAGGAGGGCGATGTGTCTTTA
AGGTTTACTCAGTTGTGTCGGTTCGCTGTTGACTCACCGAAAGCTCAGTCCGTGTACACA
GTCGCTAATAACCTGTGGCACGTGGGTATTTAAAGACAGACTTATTGGAAAATGATGTTT
TCTGCAGTGTTACCAGAATCAAGGTTCTGTTTATTCCCCACAAGACTTGCATTGAAAAAT
AAGATATTATATTTTGTTTGTATATATTTAGTGTTTTGTATAATACCAGGAACTGCTAAC
TAAATTTACTCAACTTAGGGCATTAAATATCATGTACTTCATAGTTGGAGACTGTTCACT
CAAATAGGGCAGAGTACTATTCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CT79_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CT79_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               496-615, - strand, RNAz p=0.786879

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               496-615, - strand, RNAz p=0.786879

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               5-275, gnl|bosTau2|chr3 (43362939-43363208)
               

               
               5-275, gnl|Hg17|chr1 (91115332-91115063)
               

               
               5-275, gnl|Mm7|chr5 (105812114-105811845)
               


               
               377-1104, gnl|bosTau2|chr3 (43380243-43380967)
               

               
               377-1104, gnl|Hg17|chr1 (91094570-91093847)
               

               
               377-1104, gnl|Mm7|chr5 (105795444-105794729)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-275, gnl|bosTau2|chr3 (43362939-43363208)
               

               
               5-275, gnl|Hg17|chr1 (91115332-91115063)
               

               
               5-275, gnl|Mm7|chr5 (105812114-105811845)
               


               
               377-1104, gnl|bosTau2|chr3 (43380243-43380967)
               

               
               377-1104, gnl|Hg17|chr1 (91094570-91093847)
               

               
               377-1104, gnl|Mm7|chr5 (105795444-105794729)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               fat (0.147427)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fat (0.147427)

	5-275, gnl\|bosTau2\|chr3 (43362939-43363208)
	5-275, gnl\|Hg17\|chr1 (91115332-91115063)
	5-275, gnl\|Mm7\|chr5 (105812114-105811845)

	377-1104, gnl\|bosTau2\|chr3 (43380243-43380967)
	377-1104, gnl\|Hg17\|chr1 (91094570-91093847)
	377-1104, gnl\|Mm7\|chr5 (105795444-105794729)