Non-Coding RNA Search

Ss1.1-rpigcb_2674.5

Sequence:


               
               GCAAGGCTGGGAAGCCGGACTGCACAGAACGCCAACAGCTGCAGAGGAGGCTGGGCTGTC
GGACCTTCCACTGGTTTCTGGCCAACATCTATCCTGAACTGTATCCATCTGAACGCAGGC
CCAGGTTCTCTGGAAAGCTCCACAACACCGGACTCGGCTTCTGTGCGGACTGCCTGGCGG
AAGGTGACGTCCTGGGCTGTGCCATGATGCTGGCTCCTTGCAGTGACAGCCAGCCGCAGC
AGCACCTGGAGCACCCAGGCAGGAAGGAGATCCGCTATGGCAGTCCACAGCACCTGTGCT
TTGATGTCAGGCGGGAGCAGGTGATTCTTCAGAACTGCACCAAGGAAGGCCCTGCCATCC
ACCAGCAACACTGGGACTACCAGGAGAATGGAATGATTGTTCACATTCTTTCTGGGAGAT
GCATGGAAGCTGTGGGTCAGGAGAACAATAAAGACCTGTACTTGCGCGAGTGCGATGGAA
AGGCCAGCCAGCTGTGGCACTTTGACAACGTCAGCACTGTGGATGAACGATGAGTGCCAT
GTCAGAAGGGAGAGAGAAGTGGGGCCGCTGCAGTTCCACCCCAGCGAACCACAGCAGCCT
GTGCCTTTCATGGAGCAGACCATGGTGTCTGTGCAGTGGTGAGAACAGAGACCAAAGCTC
CTCAAATGAATATAGAAAGTCTTTCCTTCTGGCCCCTTATTTCATGGACCCCTGGCTGTT
GAGGAAGACAAAACAAAACAAAACCATGGACCCGTTGTCTCATTGTCTTCATCACTAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGGCTGGGAAGCCGGACTGCACAGAACGCCAACAGCTGCAGAGGAGGCTGGGCTGTC
GGACCTTCCACTGGTTTCTGGCCAACATCTATCCTGAACTGTATCCATCTGAACGCAGGC
CCAGGTTCTCTGGAAAGCTCCACAACACCGGACTCGGCTTCTGTGCGGACTGCCTGGCGG
AAGGTGACGTCCTGGGCTGTGCCATGATGCTGGCTCCTTGCAGTGACAGCCAGCCGCAGC
AGCACCTGGAGCACCCAGGCAGGAAGGAGATCCGCTATGGCAGTCCACAGCACCTGTGCT
TTGATGTCAGGCGGGAGCAGGTGATTCTTCAGAACTGCACCAAGGAAGGCCCTGCCATCC
ACCAGCAACACTGGGACTACCAGGAGAATGGAATGATTGTTCACATTCTTTCTGGGAGAT
GCATGGAAGCTGTGGGTCAGGAGAACAATAAAGACCTGTACTTGCGCGAGTGCGATGGAA
AGGCCAGCCAGCTGTGGCACTTTGACAACGTCAGCACTGTGGATGAACGATGAGTGCCAT
GTCAGAAGGGAGAGAGAAGTGGGGCCGCTGCAGTTCCACCCCAGCGAACCACAGCAGCCT
GTGCCTTTCATGGAGCAGACCATGGTGTCTGTGCAGTGGTGAGAACAGAGACCAAAGCTC
CTCAAATGAATATAGAAAGTCTTTCCTTCTGGCCCCTTATTTCATGGACCCCTGGCTGTT
GAGGAAGACAAAACAAAACAAAACCATGGACCCGTTGTCTCATTGTCTTCATCACTAGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61810265|ref|XP_595549.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61810265|ref|XP_595549.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               4-137, gnl|bosTau2|chr1 (100475944-100475811)
               

               
               4-137, gnl|Hg17|chr3 (16235912-16236045)
               

               
               4-137, gnl|Mm7|chr14 (29481943-29482076)
               


               
               385-776, gnl|bosTau2|chr1 (100469178-100468797)
               

               
               385-776, gnl|Hg17|chr3 (16243863-16244249)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-137, gnl|bosTau2|chr1 (100475944-100475811)
               

               
               4-137, gnl|Hg17|chr3 (16235912-16236045)
               

               
               4-137, gnl|Mm7|chr14 (29481943-29482076)
               


               
               385-776, gnl|bosTau2|chr1 (100469178-100468797)
               

               
               385-776, gnl|Hg17|chr3 (16243863-16244249)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cty (0.10408)

	4-137, gnl\|bosTau2\|chr1 (100475944-100475811)
	4-137, gnl\|Hg17\|chr3 (16235912-16236045)
	4-137, gnl\|Mm7\|chr14 (29481943-29482076)

	385-776, gnl\|bosTau2\|chr1 (100469178-100468797)
	385-776, gnl\|Hg17\|chr3 (16243863-16244249)