Non-Coding RNA Search

Ss1.1-rpigcb_2677.5

Sequence:


               
               CTTGACACCATGGTATGCACAGGCTGCTGCTCCTGCCTGGACCACATCGTGACATACCTC
TTCAAGCAGCTGTCACGCAGCACCAAGAAGAGGACGACGCCCCTGAACCAGGAAAGTGAC
CGCTTTCTGCATATCATGCAGCAGCATCCAGAGATGATCCAGCAGATGCTGTCAACGGTG
CTGAACATCATCATCTTTGAAGACTGTAGGAACCAGTGGTCTATGTCCCGACCCCTGCTT
GGCTTGATACTACTCAATGAAAAGTATTTTTCTGACCTAAGGAACAGTATCGTGAACAGC
CAGCCACCAGAGAAACAGCAGGCTATGCATCTGTGTTTTGAAAACCTGATGGAAGGCATT
GAGCGAAATCTTCTAACGAAAAACAGGGACAGGTTCACCCAGAACCTGTCAGCATTCCGT
CGAGAAGTCAACGATTCGATGAAGAATTCCACTTATGGCGTGAATAGCAATGATATGATG
AGCTGACACCTCCTTGGACTCTACGTGTACAGAGCAGCGTCCCTTTGGTCTGGCCCAGAG
GGGCAAACAATTACAAAGGAGAGGGCCTGGCTGATCCTGGCCCCCTCCTCCAGGGGTGTG
GGGAAAATGGCAAAGGTCAACTAGCTTCTTCCCCAGGGAATAGGGGTGTGAGTGCACTCA
CTGGGGGGCAGGGCGCTGCTGGTTCCTGGGGGACTGGGTGGGAAGGGTGGTGGGAGGAGA
CAGAGACACAAATGTGTGAGACTCCAGCCTCCTCCTCCTGGGGCCACCCAAGGGGAAAGA
ACCCCCAGTGTCCTGCCACAACCTGCCTTGTATAAACATGTACATTTTTTCATAACATTT
TGAACAAGGTTTATATTGACTCAAGTTTAAAAACAAAGTGTGACTGAAAAATTTTTACAG
AGTCTAGTGCACCAATGCTGATGTGAGGGGTTGTGTATGCGAGTGAGGAAAAAAAAATGT
GTATTCTGGTGGCCTGAAGCTTTACTGGACGAGGATGTGTGAACGTGCAGAGATATATTT
AGTGACACAGTGTAGAGAGGCAAAAAAAAAAAAAGTAAAAATTCCAAATGTATATTTTTT
CTTATCGCCCTTTCCCTGCCCCCAAATTCTCACTTCCTGTTACTATATTACCCTTGTTAT
TAGGAACTCTAAGCCATGCAGAGCACCATCCCTCCCCCTCAGCCAGAAACGCTGCCCTGG
GTCCCTTGGCCTCTTGCAGTGAAAGACAACTCCAGCTAAAAGTGTTCGGTGTTCTTAGCT
TCATCCTCTTTCCCACTCTGCTTACCCTCATCCTCAGACAGATGCCTCTTGCTTTTAAAA
GTCAGATGCGACCCTGTGATTTAGGGTTCCTAGTCTCTGCAAAGGTGGAGACCAGAGAGA
AGGAACTGAGCCAGCTGCTCTCCCTTTGAGCAGTCTGGATGAGTCCACCAGAGGCCCAGT
GGCGTGTGGCCAATAACTTTCAGTCTTCCCCAGCCGTCGAGGCAGTGTGTGTGGATGTGT
GCGTGTGGATATTTATATATGTACCCTGCACTCGTGAATGTATGAACTGGAGGAAGTTAC
TACAGTGGAGGGGTTCTTAATAACAAGGTCTGCCTAGCATGAAGTATTTAACATTCTCCC
ACTCCTTTAAAAATATACATTTTTATAAAATGAAAACCATAATAAATGTTTTGAATATTA
AAAAAAATTAACCTACAGAGGAAAATTAATGGAGAAAGCTATTTGCCTTGTACTTTTTCC
ACAATTGTTGCTGCTAGTTGTACGCATCTCTAGTTCAGCTCTTGCCCATGGGACACTCAT
CAATTAGGTTTTATTTTTATTTCTCTCCTCTACCCCCAGAAACAAGCCTGTTGATTTTTC
TTTTTTTTTTTTTTTTCCTTCTCCTCTGGCGACTGTGTGGTGAATCCTTTCTTGCGTGAT
CAGGTTGCGGATAGACTTGTAAGGGTGTTTGCTGCATACAGTGTAAGCATTGTGACCGCC
AATAAACTTCAATGGTTTCTACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGACACCATGGTATGCACAGGCTGCTGCTCCTGCCTGGACCACATCGTGACATACCTC
TTCAAGCAGCTGTCACGCAGCACCAAGAAGAGGACGACGCCCCTGAACCAGGAAAGTGAC
CGCTTTCTGCATATCATGCAGCAGCATCCAGAGATGATCCAGCAGATGCTGTCAACGGTG
CTGAACATCATCATCTTTGAAGACTGTAGGAACCAGTGGTCTATGTCCCGACCCCTGCTT
GGCTTGATACTACTCAATGAAAAGTATTTTTCTGACCTAAGGAACAGTATCGTGAACAGC
CAGCCACCAGAGAAACAGCAGGCTATGCATCTGTGTTTTGAAAACCTGATGGAAGGCATT
GAGCGAAATCTTCTAACGAAAAACAGGGACAGGTTCACCCAGAACCTGTCAGCATTCCGT
CGAGAAGTCAACGATTCGATGAAGAATTCCACTTATGGCGTGAATAGCAATGATATGATG
AGCTGACACCTCCTTGGACTCTACGTGTACAGAGCAGCGTCCCTTTGGTCTGGCCCAGAG
GGGCAAACAATTACAAAGGAGAGGGCCTGGCTGATCCTGGCCCCCTCCTCCAGGGGTGTG
GGGAAAATGGCAAAGGTCAACTAGCTTCTTCCCCAGGGAATAGGGGTGTGAGTGCACTCA
CTGGGGGGCAGGGCGCTGCTGGTTCCTGGGGGACTGGGTGGGAAGGGTGGTGGGAGGAGA
CAGAGACACAAATGTGTGAGACTCCAGCCTCCTCCTCCTGGGGCCACCCAAGGGGAAAGA
ACCCCCAGTGTCCTGCCACAACCTGCCTTGTATAAACATGTACATTTTTTCATAACATTT
TGAACAAGGTTTATATTGACTCAAGTTTAAAAACAAAGTGTGACTGAAAAATTTTTACAG
AGTCTAGTGCACCAATGCTGATGTGAGGGGTTGTGTATGCGAGTGAGGAAAAAAAAATGT
GTATTCTGGTGGCCTGAAGCTTTACTGGACGAGGATGTGTGAACGTGCAGAGATATATTT
AGTGACACAGTGTAGAGAGGCAAAAAAAAAAAAAGTAAAAATTCCAAATGTATATTTTTT
CTTATCGCCCTTTCCCTGCCCCCAAATTCTCACTTCCTGTTACTATATTACCCTTGTTAT
TAGGAACTCTAAGCCATGCAGAGCACCATCCCTCCCCCTCAGCCAGAAACGCTGCCCTGG
GTCCCTTGGCCTCTTGCAGTGAAAGACAACTCCAGCTAAAAGTGTTCGGTGTTCTTAGCT
TCATCCTCTTTCCCACTCTGCTTACCCTCATCCTCAGACAGATGCCTCTTGCTTTTAAAA
GTCAGATGCGACCCTGTGATTTAGGGTTCCTAGTCTCTGCAAAGGTGGAGACCAGAGAGA
AGGAACTGAGCCAGCTGCTCTCCCTTTGAGCAGTCTGGATGAGTCCACCAGAGGCCCAGT
GGCGTGTGGCCAATAACTTTCAGTCTTCCCCAGCCGTCGAGGCAGTGTGTGTGGATGTGT
GCGTGTGGATATTTATATATGTACCCTGCACTCGTGAATGTATGAACTGGAGGAAGTTAC
TACAGTGGAGGGGTTCTTAATAACAAGGTCTGCCTAGCATGAAGTATTTAACATTCTCCC
ACTCCTTTAAAAATATACATTTTTATAAAATGAAAACCATAATAAATGTTTTGAATATTA
AAAAAAATTAACCTACAGAGGAAAATTAATGGAGAAAGCTATTTGCCTTGTACTTTTTCC
ACAATTGTTGCTGCTAGTTGTACGCATCTCTAGTTCAGCTCTTGCCCATGGGACACTCAT
CAATTAGGTTTTATTTTTATTTCTCTCCTCTACCCCCAGAAACAAGCCTGTTGATTTTTC
TTTTTTTTTTTTTTTTCCTTCTCCTCTGGCGACTGTGTGGTGAATCCTTTCTTGCGTGAT
CAGGTTGCGGATAGACTTGTAAGGGTGTTTGCTGCATACAGTGTAAGCATTGTGACCGCC
AATAAACTTCAATGGTTTCTACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5U3Y1_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5U3Y1_RAT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               470-806, + strand, RNAz p=0.977515
               

               
               1313-1431, - strand, RNAz p=0.997588

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               470-806, + strand, RNAz p=0.977515
               

               
               1313-1431, - strand, RNAz p=0.997588

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015024, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015024, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-168, gnl|bosTau2|chr8 (31580629-31580465)
               

               
               4-168, gnl|Hg17|chr8 (21915568-21915732)
               

               
               4-168, gnl|Mm7|chr14 (65313962-65313798)
               


               
               391-2004, gnl|bosTau2|chr8 (31577333-31575715)
               

               
               391-2004, gnl|Hg17|chr8 (21918450-21920041)
               

               
               391-2004, gnl|Mm7|chr14 (65310580-65309021)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-168, gnl|bosTau2|chr8 (31580629-31580465)
               

               
               4-168, gnl|Hg17|chr8 (21915568-21915732)
               

               
               4-168, gnl|Mm7|chr14 (65313962-65313798)
               


               
               391-2004, gnl|bosTau2|chr8 (31577333-31575715)
               

               
               391-2004, gnl|Hg17|chr8 (21918450-21920041)
               

               
               391-2004, gnl|Mm7|chr14 (65310580-65309021)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               fce (0.271592)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ese (0.253004)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	470-806, + strand, RNAz p=0.977515
	1313-1431, - strand, RNAz p=0.997588

	4-168, gnl\|bosTau2\|chr8 (31580629-31580465)
	4-168, gnl\|Hg17\|chr8 (21915568-21915732)
	4-168, gnl\|Mm7\|chr14 (65313962-65313798)

	391-2004, gnl\|bosTau2\|chr8 (31577333-31575715)
	391-2004, gnl\|Hg17\|chr8 (21918450-21920041)
	391-2004, gnl\|Mm7\|chr14 (65310580-65309021)

	fce (0.271592)
	ese (0.253004)
	mas (0.210305)
	fcc (0.197785)
	fty (0.17584)
	ton (0.1755)
	eye (0.170503)
	nje (0.16592)
	ste (0.135208)
	nmm (0.132802)
	bla (0.124347)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	clu (0.119646)
	ecc (0.115035)
	cty (0.10408)