Non-Coding RNA Search

Ss1.1-rpigcb_2747.5

Sequence:


               
               TGGACCCGACGGCGGCGGTGACGTGGGAACAGTGAACCATGGAGCTGTATTTTGGTGAAT
ATCAACATGTGCAGCAGGAATACGGCGTCCATCTGAGACTTGCAAGTGATGAAAGCAAAA
AACCAAGGAATTCCCAGCACGCTAAGACAGGCTCCTACGGGGTCAGTATTCGGGTACAGG
GGATCGACGGCCACCCCTACATAGTCCTCAATAACACAGAGCGGTGTCTGGCAGGCGCAT
CTCTTTCCGAAAACGGGCCTTCATTTCCACCTCCAATGATAAACAACCTGCCTCTCCATT
CCAACAACGGGTCTGTGCTGGAGGAGAACAGTGCAGAAGAACTGCAGCTCCCAGAAAACC
CATACGCCCAACCCAGCCCAGTAAGAAACCTGAAACAATCCTCTCTCTTGGAGGGCAAGA
ATGGAGTTCTGGAACGCAAAGAGCAGCTAGTGAAGCCCTCTCCGGTGCTAAACTTTCAGA
GGCATCCAGAGCTTTTACAGCCCTATGATCCTGAAAAGAATGAGTGGCACTTACAAAATC
ACCAGCCTCCTGAGAGTAGTTGGCTAAAAGCTTTAACGGAAGAAGGGACCAACAATAAAA
AGGCTTGGACTTGCTTGTCCAAACCTAGCCGGCTGCAGCCGACCAGCCCTCCCTTGGAAG
ACCCAGCCAAATCCAGCGTGACGGCCATTCGACTGTGCAGCTCTGTGGTCATGGAGGGGG
GGAAGAAGCAGACCTCGGTGTGCGTGAATGTGCAGAGCTGCAGCAAGGAGGTAGAGGAGG
CCCTTTCCCCTGGCGGGAGGCCTCTACCCACCCACGGCCCGCACACCCACCCGGAAGCCA
AGAAAACCAGGCCTGACGTGCTCCCCTTCCGGCGCCAGGACTCGGCAGGACCCGTCCTGG
ATGGAGCCCGGTCCCGGAGATCGTCCTCCTCATCCACAACTCCCACTTCGGCCAACTCTT
TGTACAGATTTTTACTCGACGATCAGGAATGTGCCATCCATGCCGACAATGTGAATCGTC
ATGAAAACAGAAGGTATATCCCCTTCTTGCCCGGAACTGGGCGGGATATTGATACGGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACCCGACGGCGGCGGTGACGTGGGAACAGTGAACCATGGAGCTGTATTTTGGTGAAT
ATCAACATGTGCAGCAGGAATACGGCGTCCATCTGAGACTTGCAAGTGATGAAAGCAAAA
AACCAAGGAATTCCCAGCACGCTAAGACAGGCTCCTACGGGGTCAGTATTCGGGTACAGG
GGATCGACGGCCACCCCTACATAGTCCTCAATAACACAGAGCGGTGTCTGGCAGGCGCAT
CTCTTTCCGAAAACGGGCCTTCATTTCCACCTCCAATGATAAACAACCTGCCTCTCCATT
CCAACAACGGGTCTGTGCTGGAGGAGAACAGTGCAGAAGAACTGCAGCTCCCAGAAAACC
CATACGCCCAACCCAGCCCAGTAAGAAACCTGAAACAATCCTCTCTCTTGGAGGGCAAGA
ATGGAGTTCTGGAACGCAAAGAGCAGCTAGTGAAGCCCTCTCCGGTGCTAAACTTTCAGA
GGCATCCAGAGCTTTTACAGCCCTATGATCCTGAAAAGAATGAGTGGCACTTACAAAATC
ACCAGCCTCCTGAGAGTAGTTGGCTAAAAGCTTTAACGGAAGAAGGGACCAACAATAAAA
AGGCTTGGACTTGCTTGTCCAAACCTAGCCGGCTGCAGCCGACCAGCCCTCCCTTGGAAG
ACCCAGCCAAATCCAGCGTGACGGCCATTCGACTGTGCAGCTCTGTGGTCATGGAGGGGG
GGAAGAAGCAGACCTCGGTGTGCGTGAATGTGCAGAGCTGCAGCAAGGAGGTAGAGGAGG
CCCTTTCCCCTGGCGGGAGGCCTCTACCCACCCACGGCCCGCACACCCACCCGGAAGCCA
AGAAAACCAGGCCTGACGTGCTCCCCTTCCGGCGCCAGGACTCGGCAGGACCCGTCCTGG
ATGGAGCCCGGTCCCGGAGATCGTCCTCCTCATCCACAACTCCCACTTCGGCCAACTCTT
TGTACAGATTTTTACTCGACGATCAGGAATGTGCCATCCATGCCGACAATGTGAATCGTC
ATGAAAACAGAAGGTATATCCCCTTCTTGCCCGGAACTGGGCGGGATATTGATACGGGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26333967|dbj|BAC30701.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26333967|dbj|BAC30701.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               23-1080, gnl|bosTau2|chr10 (34950031-34948971)
               

               
               23-1080, gnl|Hg17|chr15 (55517474-55518534)
               

               
               23-1080, gnl|Mm7|chr9 (71760932-71759869)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               23-1080, gnl|bosTau2|chr10 (34950031-34948971)
               

               
               23-1080, gnl|Hg17|chr15 (55517474-55518534)
               

               
               23-1080, gnl|Mm7|chr9 (71760932-71759869)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	23-1080, gnl\|bosTau2\|chr10 (34950031-34948971)
	23-1080, gnl\|Hg17\|chr15 (55517474-55518534)
	23-1080, gnl\|Mm7\|chr9 (71760932-71759869)