Non-Coding RNA Search

Ss1.1-rpigcb_2771.5

Sequence:


               
               GTACTATTTGAAGTATTGTTTGATGAAGAATTTCCTGGAGGCTTAACAATAAGGTGCTCA
CCTGGTAGAGGTTATCGACTGCCAACAAGTGCCTTGGTGAACCTTTCTCATGGGAGTCGC
TCTGAAACTGGAAGTCAGAAGTTGACAGCCATTGTGAAACCACAGCCAGCTGTGAATCAC
TATAGCTCAAATTCATCAGTTTCATCTGGGCATTTGGGAGGCCTGAACCATTCCCCTCAG
TCACTTTTTGTTCCCACTCAAGTACCTGCTAAAGATGATGATGAATTTTGCAATATTTGG
CAGTCCTTACAGGAATCGGGAAAGGTTCAACATTTTCAGCCAGCTCTACAAGAGAAGGGT
GCTGTTCTACCCCAAGAAATAAGTCAAGTAACTCAACATAATAAATCTGGCTTTAATGAC
AACAGTGTTAAGCAAAGAAAACATGAGCCTCACAAAAAATTTAAAGAAGAGTGTAAGAGT
CCTAAAACTGAGAGTCGCTCACAAAAAATGTCAAATAGGCAGACGTTTGCAGGGCATGCC
AAATGTAATATTAAGCTATTGAAGAGAAATGAAAGTGCAGAAGCCTCAGAAAACCAAAAG
GCTGTGATGGGTTATCCAAATGCTATTGATAAGCCTAATCCTGGAATTGAGAATTTCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTACTATTTGAAGTATTGTTTGATGAAGAATTTCCTGGAGGCTTAACAATAAGGTGCTCA
CCTGGTAGAGGTTATCGACTGCCAACAAGTGCCTTGGTGAACCTTTCTCATGGGAGTCGC
TCTGAAACTGGAAGTCAGAAGTTGACAGCCATTGTGAAACCACAGCCAGCTGTGAATCAC
TATAGCTCAAATTCATCAGTTTCATCTGGGCATTTGGGAGGCCTGAACCATTCCCCTCAG
TCACTTTTTGTTCCCACTCAAGTACCTGCTAAAGATGATGATGAATTTTGCAATATTTGG
CAGTCCTTACAGGAATCGGGAAAGGTTCAACATTTTCAGCCAGCTCTACAAGAGAAGGGT
GCTGTTCTACCCCAAGAAATAAGTCAAGTAACTCAACATAATAAATCTGGCTTTAATGAC
AACAGTGTTAAGCAAAGAAAACATGAGCCTCACAAAAAATTTAAAGAAGAGTGTAAGAGT
CCTAAAACTGAGAGTCGCTCACAAAAAATGTCAAATAGGCAGACGTTTGCAGGGCATGCC
AAATGTAATATTAAGCTATTGAAGAGAAATGAAAGTGCAGAAGCCTCAGAAAACCAAAAG
GCTGTGATGGGTTATCCAAATGCTATTGATAAGCCTAATCCTGGAATTGAGAATTTCTTA

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               43-264, gnl|bosTau2|chr1 (79019155-79019376)
               

               
               43-264, gnl|Hg17|chr3 (143558669-143558449)
               

               
               43-264, gnl|Mm7|chr9 (95669845-95670052)
               


               
               356-464, gnl|bosTau2|chr1 (79026891-79026999)
               

               
               356-464, gnl|Hg17|chr3 (143548884-143548770)
               

               
               356-464, gnl|Mm7|chr9 (95679412-95679526)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               43-264, gnl|bosTau2|chr1 (79019155-79019376)
               

               
               43-264, gnl|Hg17|chr3 (143558669-143558449)
               

               
               43-264, gnl|Mm7|chr9 (95669845-95670052)
               


               
               356-464, gnl|bosTau2|chr1 (79026891-79026999)
               

               
               356-464, gnl|Hg17|chr3 (143548884-143548770)
               

               
               356-464, gnl|Mm7|chr9 (95679412-95679526)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	43-264, gnl\|bosTau2\|chr1 (79019155-79019376)
	43-264, gnl\|Hg17\|chr3 (143558669-143558449)
	43-264, gnl\|Mm7\|chr9 (95669845-95670052)

	356-464, gnl\|bosTau2\|chr1 (79026891-79026999)
	356-464, gnl\|Hg17\|chr3 (143548884-143548770)
	356-464, gnl\|Mm7\|chr9 (95679412-95679526)