Non-Coding RNA Search

Ss1.1-rpigcb_3508.5

Sequence:


               
               TTCAGGGAACAAATATCTTCACTGCCCCAAAGGAATTGCTGACATCAAGGCCCAGCTGGA
GGCAGCCCTGAAGTGGAGGAACTATGAGGTGAAGCTCCGGCTGCTGCTGCACCTGGAGGA
GCTGCAGATGGAGCATGACATCCGGCACTATGACCTGGAGTCGGTGCCCATGACCTGGGA
CCCCATAGACCAGAACCCCAGGCTGCTCACACTGGAGGTTCCCGGGGTGGCCGAGAGCCG
CCCCTCAGTGCTGCGGGGTGACCACCTGTTTGCCGTTTTGTCCTCTGAGACACACCAGGA
GGACGCTGTCACCTACAAGGGCTTTGTGCACAGGGTAGAACTCGATCGGGTCAAGCTGAG
CTTTTCCGCGAGCCTCCTGGACCGCTTTGTGGATGGGCTGACCTTCAAGGTGAACTTCAC
CTTCAACCGCCAGCCCCTGCGGGTGCAGCACCGAGCCCTGGAGCTGACAGGGCGCTGGCC
GCTGTGGCCCATGCTCTTCCCTGTGGCCTCCCGTGGGGTCCCGCTGCTGCCCTCCGATGT
GAAGCTCAAGCTCTACGACCGCAGTCTGGAGTCCAACCCGGAGCAGCTGCAGGCCATGAA
GCACATTGTTATGGGCACCACCCGTCCCGCCCCCTACATCATCTTCGGACCTCCAGGCAC
TGGCAAGACTGTCACCTTAGTGGAAGCCATCAAGCAGGTGGTGAAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCAGGGAACAAATATCTTCACTGCCCCAAAGGAATTGCTGACATCAAGGCCCAGCTGGA
GGCAGCCCTGAAGTGGAGGAACTATGAGGTGAAGCTCCGGCTGCTGCTGCACCTGGAGGA
GCTGCAGATGGAGCATGACATCCGGCACTATGACCTGGAGTCGGTGCCCATGACCTGGGA
CCCCATAGACCAGAACCCCAGGCTGCTCACACTGGAGGTTCCCGGGGTGGCCGAGAGCCG
CCCCTCAGTGCTGCGGGGTGACCACCTGTTTGCCGTTTTGTCCTCTGAGACACACCAGGA
GGACGCTGTCACCTACAAGGGCTTTGTGCACAGGGTAGAACTCGATCGGGTCAAGCTGAG
CTTTTCCGCGAGCCTCCTGGACCGCTTTGTGGATGGGCTGACCTTCAAGGTGAACTTCAC
CTTCAACCGCCAGCCCCTGCGGGTGCAGCACCGAGCCCTGGAGCTGACAGGGCGCTGGCC
GCTGTGGCCCATGCTCTTCCCTGTGGCCTCCCGTGGGGTCCCGCTGCTGCCCTCCGATGT
GAAGCTCAAGCTCTACGACCGCAGTCTGGAGTCCAACCCGGAGCAGCTGCAGGCCATGAA
GCACATTGTTATGGGCACCACCCGTCCCGCCCCCTACATCATCTTCGGACCTCCAGGCAC
TGGCAAGACTGTCACCTTAGTGGAAGCCATCAAGCAGGTGGTGAAGCA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               77-195, + strand, RNAz p=0.938826
               

               
               85-219, - strand, RNAz p=0.864346

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               77-195, + strand, RNAz p=0.938826
               

               
               85-219, - strand, RNAz p=0.864346

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               46-219, gnl|bosTau2|chr3 (27398642-27398815)
               

               
               46-219, gnl|canFam2|chr17 (65957783-65957665)
               

               
               46-219, gnl|danRer3|chr6 (30389209-30389091)
               

               
               46-219, gnl|echTel1|scaffold_310965 (78447-78565)
               

               
               46-219, gnl|galGal2|chr26 (2117609-2117728)
               

               
               46-219, gnl|hg17|chr1 (112947416-112947534)
               

               
               46-219, gnl|Hg17|chr1 (112947422-112947595)
               

               
               46-219, gnl|loxAfr1|scaffold_5140 (11602-11484)
               

               
               46-219, gnl|mm7|chr3 (104595400-104595282)
               

               
               46-219, gnl|Mm7|chr3 (104595392-104595219)
               

               
               46-219, gnl|monDom2|scaffold_0 (2580365-2580247)
               

               
               46-219, gnl|panTro1|chr1 (109311457-109311339)
               

               
               46-219, gnl|rheMac2|chr1 (115682026-115682144)
               

               
               46-219, gnl|rn3|chr2 (200024640-200024522)
               

               
               46-219, gnl|tetNig1|chr11 (7567165-7567278)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-219, gnl|bosTau2|chr3 (27398642-27398815)
               

               
               46-219, gnl|canFam2|chr17 (65957783-65957665)
               

               
               46-219, gnl|danRer3|chr6 (30389209-30389091)
               

               
               46-219, gnl|echTel1|scaffold_310965 (78447-78565)
               

               
               46-219, gnl|galGal2|chr26 (2117609-2117728)
               

               
               46-219, gnl|hg17|chr1 (112947416-112947534)
               

               
               46-219, gnl|Hg17|chr1 (112947422-112947595)
               

               
               46-219, gnl|loxAfr1|scaffold_5140 (11602-11484)
               

               
               46-219, gnl|mm7|chr3 (104595400-104595282)
               

               
               46-219, gnl|Mm7|chr3 (104595392-104595219)
               

               
               46-219, gnl|monDom2|scaffold_0 (2580365-2580247)
               

               
               46-219, gnl|panTro1|chr1 (109311457-109311339)
               

               
               46-219, gnl|rheMac2|chr1 (115682026-115682144)
               

               
               46-219, gnl|rn3|chr2 (200024640-200024522)
               

               
               46-219, gnl|tetNig1|chr11 (7567165-7567278)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	77-195, + strand, RNAz p=0.938826
	85-219, - strand, RNAz p=0.864346

	46-219, gnl\|bosTau2\|chr3 (27398642-27398815)
	46-219, gnl\|canFam2\|chr17 (65957783-65957665)
	46-219, gnl\|danRer3\|chr6 (30389209-30389091)
	46-219, gnl\|echTel1\|scaffold_310965 (78447-78565)
	46-219, gnl\|galGal2\|chr26 (2117609-2117728)
	46-219, gnl\|hg17\|chr1 (112947416-112947534)
	46-219, gnl\|Hg17\|chr1 (112947422-112947595)
	46-219, gnl\|loxAfr1\|scaffold_5140 (11602-11484)
	46-219, gnl\|mm7\|chr3 (104595400-104595282)
	46-219, gnl\|Mm7\|chr3 (104595392-104595219)
	46-219, gnl\|monDom2\|scaffold_0 (2580365-2580247)
	46-219, gnl\|panTro1\|chr1 (109311457-109311339)
	46-219, gnl\|rheMac2\|chr1 (115682026-115682144)
	46-219, gnl\|rn3\|chr2 (200024640-200024522)
	46-219, gnl\|tetNig1\|chr11 (7567165-7567278)