Non-Coding RNA Search

Ss1.1-rpigcb_3563.5

Sequence:


               
               TTTCCTTATATGGTGAAAGCTCTAATACCCCCTTCTCATCAGAGCCGCTAAAGGAAGATA
AGCCCATTATTGGTCCTAGGAGCAAAACTGAAAATGGACTGACTCCAAAGAAGAAAATTC
AGATAAATTCAAAACCTTCAATTCAGCCCAAGCCTTTGTTACTTCCAGCAGCACCCAAGA
CTCAAACGAAACTCCAGTGTTCCAGCGAAAACCATCATTATTCAGACACTACCAACACTT
ATGCCATTGGCAAAGCAGCAGCCAGTTATCAGTATACATCCTGCACCCACTAAAGGTCAG
ACGGTGGTGCTCTCTCAGCCTACCATGGTACAACTCCAGGCACCTGGAGTTCTGCCCTCC
CCTCAGCCAGTCCTTGCTGTCACTGGGGGCGCCACACAGCTACCTAATCACGTGGTGAAT
GTGGTCCCAGCCCCTGTGGCAAATAGCCCAGTGAATGGAAAACTTTCTGTGACTAAACCT
GTGCTTCAGAGTACCATGAGAAGTGTGGGTTCAGATGTAAGTTTTGAAACTTAGTACTTT
TTTAATGCCTGATTTAAAAAATGAAAACAGTACGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCCTTATATGGTGAAAGCTCTAATACCCCCTTCTCATCAGAGCCGCTAAAGGAAGATA
AGCCCATTATTGGTCCTAGGAGCAAAACTGAAAATGGACTGACTCCAAAGAAGAAAATTC
AGATAAATTCAAAACCTTCAATTCAGCCCAAGCCTTTGTTACTTCCAGCAGCACCCAAGA
CTCAAACGAAACTCCAGTGTTCCAGCGAAAACCATCATTATTCAGACACTACCAACACTT
ATGCCATTGGCAAAGCAGCAGCCAGTTATCAGTATACATCCTGCACCCACTAAAGGTCAG
ACGGTGGTGCTCTCTCAGCCTACCATGGTACAACTCCAGGCACCTGGAGTTCTGCCCTCC
CCTCAGCCAGTCCTTGCTGTCACTGGGGGCGCCACACAGCTACCTAATCACGTGGTGAAT
GTGGTCCCAGCCCCTGTGGCAAATAGCCCAGTGAATGGAAAACTTTCTGTGACTAAACCT
GTGCTTCAGAGTACCATGAGAAGTGTGGGTTCAGATGTAAGTTTTGAAACTTAGTACTTT
TTTAATGCCTGATTTAAAAAATGAAAACAGTACGAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               90-188, + strand, RNAz p=0.841121

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               90-188, + strand, RNAz p=0.841121

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               90-297, gnl|bosTau2|chr3 (18952297-18952091)
               

               
               90-297, gnl|canFam2|chr38 (23876394-23875983)
               

               
               90-297, gnl|dasNov1|scaffold_68658 (12467-12878)
               

               
               90-297, gnl|echTel1|scaffold_291960 (55453-55026)
               

               
               90-297, gnl|hg17|chr1 (158493395-158493809)
               

               
               90-297, gnl|Hg17|chr1 (158493571-158493777)
               

               
               90-297, gnl|loxAfr1|scaffold_4023 (96927-96520)
               

               
               90-297, gnl|mm7|chr1 (170817579-170817126)
               

               
               90-297, gnl|Mm7|chr1 (170817361-170817155)
               

               
               90-297, gnl|monDom2|scaffold_16 (11348183-11348576)
               

               
               90-297, gnl|oryCun1|scaffold_205982 (4050-3647)
               

               
               90-297, gnl|panTro1|chr1 (140623691-140624105)
               

               
               90-297, gnl|rheMac2|chr1 (140317577-140317936)
               

               
               90-297, gnl|rn3|chr13 (86710636-86710221)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               90-297, gnl|bosTau2|chr3 (18952297-18952091)
               

               
               90-297, gnl|canFam2|chr38 (23876394-23875983)
               

               
               90-297, gnl|dasNov1|scaffold_68658 (12467-12878)
               

               
               90-297, gnl|echTel1|scaffold_291960 (55453-55026)
               

               
               90-297, gnl|hg17|chr1 (158493395-158493809)
               

               
               90-297, gnl|Hg17|chr1 (158493571-158493777)
               

               
               90-297, gnl|loxAfr1|scaffold_4023 (96927-96520)
               

               
               90-297, gnl|mm7|chr1 (170817579-170817126)
               

               
               90-297, gnl|Mm7|chr1 (170817361-170817155)
               

               
               90-297, gnl|monDom2|scaffold_16 (11348183-11348576)
               

               
               90-297, gnl|oryCun1|scaffold_205982 (4050-3647)
               

               
               90-297, gnl|panTro1|chr1 (140623691-140624105)
               

               
               90-297, gnl|rheMac2|chr1 (140317577-140317936)
               

               
               90-297, gnl|rn3|chr13 (86710636-86710221)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	90-297, gnl\|bosTau2\|chr3 (18952297-18952091)
	90-297, gnl\|canFam2\|chr38 (23876394-23875983)
	90-297, gnl\|dasNov1\|scaffold_68658 (12467-12878)
	90-297, gnl\|echTel1\|scaffold_291960 (55453-55026)
	90-297, gnl\|hg17\|chr1 (158493395-158493809)
	90-297, gnl\|Hg17\|chr1 (158493571-158493777)
	90-297, gnl\|loxAfr1\|scaffold_4023 (96927-96520)
	90-297, gnl\|mm7\|chr1 (170817579-170817126)
	90-297, gnl\|Mm7\|chr1 (170817361-170817155)
	90-297, gnl\|monDom2\|scaffold_16 (11348183-11348576)
	90-297, gnl\|oryCun1\|scaffold_205982 (4050-3647)
	90-297, gnl\|panTro1\|chr1 (140623691-140624105)
	90-297, gnl\|rheMac2\|chr1 (140317577-140317936)
	90-297, gnl\|rn3\|chr13 (86710636-86710221)