Ss1.1-rpigcb_3836.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACAACAAAGATGGCGGCAGGAACCAGCAATTACTGGGAAGATCTCAGGAAACAGGCTC GGCAGCTGGAAAATGAACTTGACCTGAAACTAGTTTCCTTCAGTAAACTCTGTACAAGTT ACAGTCACAGCAGTGCCCGAGATGGAAGACGCGACAGCTCTGACACAACACCCCTTTTAA ATGGATCAAGCCAAGATAGAATGTTTGAAACTATGGCAATTGAGATTGAACAGCTTTTGG CCAGGCTTACAGGAGTAAATGATAAAATGGCAGAATATACTAACAGTGCAGGTGTCCCGT CCTTGAATGCAGCACTGATGCATACATTACAGCGACATAGAGACATATTGCAGGATTATA CACATGAATTCCATAAAACCAAAGCAAACTTTGTGGCAATACGGGAAAGGGAGAATCTCA TGGGATCAGTACGAAAGGACATTGAGTCATATAAAAGTGGTTCTGGAGTAAACAACAGAA GAACTGAACTATTTTTGAAAGAACATGACCACCTTCGAAACTCAGATCGTCTAATAGAAG AGACAATAAGCATTGCTATGGCAACAAAAGAAAATATGACTTCACAGAGAGGAATGTTGA AGTCAATTCAAAGCAAAATGAACACTTTGGCCAATCGTTTTCCTGCTGTGAACAGCCTGA TCCAGCGGATCAACCTTAGGAAGCGGCGAGACTCCCTCATCCTGGGGGGTGTTGTTGGCA TCTGTACCATCCTATTGCTGCTCTATGCTTTCCATTGATGGGACATCTCCGGGGACTCTT GACAGCCACCACTTTCTCGCCCTGATCTGGAATAAGGAAAAGTAGCAAGGAGAAGTTGAC TGACCTGACAATGAGCCTGACCAGCAGGATTCATTCAAGACAGATAGTGATGGACTCCGT GACATTGTCAGGTTGAGCTGAAGCCACAGGTTTTCTGTGCTGTCTTTTCTAACACACATT TCTCTCTGTTTTTAGTTTAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACAACAAAGATGGCGGCAGGAACCAGCAATTACTGGGAAGATCTCAGGAAACAGGCTC GGCAGCTGGAAAATGAACTTGACCTGAAACTAGTTTCCTTCAGTAAACTCTGTACAAGTT ACAGTCACAGCAGTGCCCGAGATGGAAGACGCGACAGCTCTGACACAACACCCCTTTTAA ATGGATCAAGCCAAGATAGAATGTTTGAAACTATGGCAATTGAGATTGAACAGCTTTTGG CCAGGCTTACAGGAGTAAATGATAAAATGGCAGAATATACTAACAGTGCAGGTGTCCCGT CCTTGAATGCAGCACTGATGCATACATTACAGCGACATAGAGACATATTGCAGGATTATA CACATGAATTCCATAAAACCAAAGCAAACTTTGTGGCAATACGGGAAAGGGAGAATCTCA TGGGATCAGTACGAAAGGACATTGAGTCATATAAAAGTGGTTCTGGAGTAAACAACAGAA GAACTGAACTATTTTTGAAAGAACATGACCACCTTCGAAACTCAGATCGTCTAATAGAAG AGACAATAAGCATTGCTATGGCAACAAAAGAAAATATGACTTCACAGAGAGGAATGTTGA AGTCAATTCAAAGCAAAATGAACACTTTGGCCAATCGTTTTCCTGCTGTGAACAGCCTGA TCCAGCGGATCAACCTTAGGAAGCGGCGAGACTCCCTCATCCTGGGGGGTGTTGTTGGCA TCTGTACCATCCTATTGCTGCTCTATGCTTTCCATTGATGGGACATCTCCGGGGACTCTT GACAGCCACCACTTTCTCGCCCTGATCTGGAATAAGGAAAAGTAGCAAGGAGAAGTTGAC TGACCTGACAATGAGCCTGACCAGCAGGATTCATTCAAGACAGATAGTGATGGACTCCGT GACATTGTCAGGTTGAGCTGAAGCCACAGGTTTTCTGTGCTGTCTTTTCTAACACACATT TCTCTCTGTTTTTAGTTTAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 40-157, gnl|bosTau2|chr19 (15987211-15987328) | |
| 40-157, gnl|canFam2|chr9 (47806828-47806987) | |
| 40-157, gnl|danRer3|chr15 (31876115-31875972) | |
| 40-157, gnl|dasNov1|scaffold_83782 (3361-3503) | |
| 40-157, gnl|echTel1|scaffold_212102 (4552-4392) | |
| 40-157, gnl|fr1|chrUn (190763862-190763728) | |
| 40-157, gnl|galGal2|chr19 (5851266-5851372) | |
| 40-157, gnl|hg17|chr17 (25832248-25832407) | |
| 40-157, gnl|Hg17|chr17 (25832284-25832401) | |
| 40-157, gnl|loxAfr1|scaffold_16771 (16815-16657) | |
| 40-157, gnl|mm7|chr11 (76842969-76842811) | |
| 40-157, gnl|Mm7|chr11 (76842933-76842815) | |
| 40-157, gnl|monDom2|scaffold_86 (933830-933989) | |
| 40-157, gnl|oryCun1|scaffold_183417 (95256-95089) | |
| 40-157, gnl|panTro1|chr19 (29195797-29195956) | |
| 40-157, gnl|rheMac2|chr16 (25729427-25729586) | |
| 40-157, gnl|rn3|chr10 (67422962-67423119) | |
| 40-157, gnl|tetNig1|chr10 (10076488-10076366) | |
| 40-157, gnl|xenTro1|scaffold_454 (1034356-1034215) | |
| 346-447, gnl|bosTau2|chr19 (15997883-15997984) | |
| 346-447, gnl|canFam2|chr9 (47818320-47818415) | |
| 346-447, gnl|danRer3|chr15 (31873134-31873039) | |
| 346-447, gnl|dasNov1|scaffold_63961 (2265-2360) | |
| 346-447, gnl|echTel1|scaffold_170659 (99-4) | |
| 346-447, gnl|fr1|chrUn (190762630-190762539) | |
| 346-447, gnl|hg17|chr17 (23054938-23055033) | |
| 346-447, gnl|Hg17|chr17 (25841262-25841363) | |
| 346-447, gnl|loxAfr1|scaffold_16771 (5347-5252) | |
| 346-447, gnl|mm7|chr11 (76832487-76832392) | |
| 346-447, gnl|Mm7|chr11 (76832484-76832383) | |
| 346-447, gnl|monDom2|scaffold_86 (945838-945934) | |
| 346-447, gnl|oryCun1|scaffold_199755 (42143-42048) | |
| 346-447, gnl|panTro1|chr19 (26385170-26385265) | |
| 346-447, gnl|rheMac2|chr16 (25738150-25738245) | |
| 346-447, gnl|rn3|chr10 (67431324-67431419) | |
| 346-447, gnl|tetNig1|chr10 (10074187-10074096) | |
| 634-984, gnl|bosTau2|chr19 (16019089-16019437) | |
| 634-984, gnl|Hg17|chr17 (25873398-25873744) | |
| 634-984, gnl|Mm7|chr11 (76811807-76811473) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-157, gnl|bosTau2|chr19 (15987211-15987328) | |
| 40-157, gnl|canFam2|chr9 (47806828-47806987) | |
| 40-157, gnl|danRer3|chr15 (31876115-31875972) | |
| 40-157, gnl|dasNov1|scaffold_83782 (3361-3503) | |
| 40-157, gnl|echTel1|scaffold_212102 (4552-4392) | |
| 40-157, gnl|fr1|chrUn (190763862-190763728) | |
| 40-157, gnl|galGal2|chr19 (5851266-5851372) | |
| 40-157, gnl|hg17|chr17 (25832248-25832407) | |
| 40-157, gnl|Hg17|chr17 (25832284-25832401) | |
| 40-157, gnl|loxAfr1|scaffold_16771 (16815-16657) | |
| 40-157, gnl|mm7|chr11 (76842969-76842811) | |
| 40-157, gnl|Mm7|chr11 (76842933-76842815) | |
| 40-157, gnl|monDom2|scaffold_86 (933830-933989) | |
| 40-157, gnl|oryCun1|scaffold_183417 (95256-95089) | |
| 40-157, gnl|panTro1|chr19 (29195797-29195956) | |
| 40-157, gnl|rheMac2|chr16 (25729427-25729586) | |
| 40-157, gnl|rn3|chr10 (67422962-67423119) | |
| 40-157, gnl|tetNig1|chr10 (10076488-10076366) | |
| 40-157, gnl|xenTro1|scaffold_454 (1034356-1034215) | |
| 346-447, gnl|bosTau2|chr19 (15997883-15997984) | |
| 346-447, gnl|canFam2|chr9 (47818320-47818415) | |
| 346-447, gnl|danRer3|chr15 (31873134-31873039) | |
| 346-447, gnl|dasNov1|scaffold_63961 (2265-2360) | |
| 346-447, gnl|echTel1|scaffold_170659 (99-4) | |
| 346-447, gnl|fr1|chrUn (190762630-190762539) | |
| 346-447, gnl|hg17|chr17 (23054938-23055033) | |
| 346-447, gnl|Hg17|chr17 (25841262-25841363) | |
| 346-447, gnl|loxAfr1|scaffold_16771 (5347-5252) | |
| 346-447, gnl|mm7|chr11 (76832487-76832392) | |
| 346-447, gnl|Mm7|chr11 (76832484-76832383) | |
| 346-447, gnl|monDom2|scaffold_86 (945838-945934) | |
| 346-447, gnl|oryCun1|scaffold_199755 (42143-42048) | |
| 346-447, gnl|panTro1|chr19 (26385170-26385265) | |
| 346-447, gnl|rheMac2|chr16 (25738150-25738245) | |
| 346-447, gnl|rn3|chr10 (67431324-67431419) | |
| 346-447, gnl|tetNig1|chr10 (10074187-10074096) | |
| 634-984, gnl|bosTau2|chr19 (16019089-16019437) | |
| 634-984, gnl|Hg17|chr17 (25873398-25873744) | |
| 634-984, gnl|Mm7|chr11 (76811807-76811473) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ste (0.270416) | |
| ova (0.129132) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ste (0.270416) | |
| ova (0.129132) | |
| cty (0.10408) | |
| eje (0.0988338) |