Non-Coding RNA Search

Ss1.1-rpigcb_3891.5

Sequence:


               
               GTTGCCACTCCATGGAAAACCTCATTTTGAAAGGAAGCTTCAGCAGCTGAGGCTCATCGG
CTGTGGCTCATGAGTAGCTGATTTACAAGCAGCTTCCCTATTAGGTGGCCCTACAAGACC
ACTGGAAGCTTATAGGTTACATTAATTTTTAACAATTCCAAGTGATTGCAACCTAAGTGA
GAGCCAAGATTTTACGCAGTGATGGCTATTGGTATTTGTTTCTCACATTTATATTTCCAT
GACTCTTGCAATTCGATTATATGTCAAGTTGCTTCAGGGCTCATAGAATTCATTCACTCT
ACAAACACAATAGTCACTGGGGTAGAGTAGTGAAAACACCTGGGCTCTCTGCTCAGGCAG
CTTCCTGTCTGGTTGGACAAGAAAACAATAGCAATGAAAGATAATAAAAGAAAGTAACAA
TGAAAGATAATAAACGGTGATAAGCACATGGTAAGTGAGGCTCCCAATGTGTAGATTAGA
TCTTTTTTTAAGTTTCTACTCCATTTATAGTTATGCAATATTGGCTATATTCCCTGTGTT
GTACAATAAATCCTTGTAGCTCATTTTATACACAATAGTTTATACCTCCTAATCCCCTAC
CCCCTATTACCCTTCCCCTTTTCCTTCTCCCCATTGGTAATGACTAGTTTGTTCTCTATA
TCTGTGAATTTGTTTCCTTTTTAAAAGTATTCACTAGTTTTTTGTATTTTTTAGATTCTA
CATATAAGTGATATCATATGTATTTGTCATTCTCTGTCTGACTTCACTTAGTATGATAAT
CGTTAGGTCCATCCATGTTGCTGCAGATGGCAAAATTTCACGCTTTGTTATGGCTGAGTA
GTATTCCATTGTGTATATATACCACATCTTTATCCATTCATCTGTTAATGGACACATAGG
TTTCTTCCATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGCCACTCCATGGAAAACCTCATTTTGAAAGGAAGCTTCAGCAGCTGAGGCTCATCGG
CTGTGGCTCATGAGTAGCTGATTTACAAGCAGCTTCCCTATTAGGTGGCCCTACAAGACC
ACTGGAAGCTTATAGGTTACATTAATTTTTAACAATTCCAAGTGATTGCAACCTAAGTGA
GAGCCAAGATTTTACGCAGTGATGGCTATTGGTATTTGTTTCTCACATTTATATTTCCAT
GACTCTTGCAATTCGATTATATGTCAAGTTGCTTCAGGGCTCATAGAATTCATTCACTCT
ACAAACACAATAGTCACTGGGGTAGAGTAGTGAAAACACCTGGGCTCTCTGCTCAGGCAG
CTTCCTGTCTGGTTGGACAAGAAAACAATAGCAATGAAAGATAATAAAAGAAAGTAACAA
TGAAAGATAATAAACGGTGATAAGCACATGGTAAGTGAGGCTCCCAATGTGTAGATTAGA
TCTTTTTTTAAGTTTCTACTCCATTTATAGTTATGCAATATTGGCTATATTCCCTGTGTT
GTACAATAAATCCTTGTAGCTCATTTTATACACAATAGTTTATACCTCCTAATCCCCTAC
CCCCTATTACCCTTCCCCTTTTCCTTCTCCCCATTGGTAATGACTAGTTTGTTCTCTATA
TCTGTGAATTTGTTTCCTTTTTAAAAGTATTCACTAGTTTTTTGTATTTTTTAGATTCTA
CATATAAGTGATATCATATGTATTTGTCATTCTCTGTCTGACTTCACTTAGTATGATAAT
CGTTAGGTCCATCCATGTTGCTGCAGATGGCAAAATTTCACGCTTTGTTATGGCTGAGTA
GTATTCCATTGTGTATATATACCACATCTTTATCCATTCATCTGTTAATGGACACATAGG
TTTCTTCCATAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56487240|emb|CAI00878.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56487240|emb|CAI00878.1|

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               465-912, gnl|bosTau2|chr10 (11032392-11032842)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               465-912, gnl|bosTau2|chr10 (11032392-11032842)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               spl (0.286369)
               

               
               thg (0.253582)
               

               
               cty (0.20816)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               thg (0.253582)
               

               
               cty (0.20816)