Ss1.1-rpigcb_3894.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAAACCCAAGTCAGAAATCCATGTATCTATGGCCACTCCAGTCACTGTGTCAATGGAG ACCATATCCAATCAAAATACTGATCAGCCCACCATCGCAGTCCCACCCACCGCCCAGCAG CCTCCACCAACCATTCCAACCATGATTACAGCAGCTAGCCCCCCATCACAACCAGCCGTC GCCCTTCCAACCATTCCTGGAGCAGTTCCCATCACTCCACCCATCACTACCATTGCAGCT GCCCCTCCACCATCAGCAGCAGTAGGTGGCAGTCTCTCCTCCGTTTTGGGCCCTCCTGTT CCTGAAATAAAAGTTAAAGAAGAAGTGGAACCAATGGACATCATGAGACCGGTTTCCGCA GTTCCTCCCCTGGCTACCAACACCGTGTCTCCATCACTGGCATTGCTGGCTAACAACCTG TCCATGCCGACAAGTGACCTACCACCCGGTGCCTCCCCAAGGAAAAAGCCTCGGAAGCAG CAGCACGTGATTTCAACAGAAGAAGGGGATATGATGGAGACCAACAGCACGGACGACGAG AAGTCCACTGCCAAGAGTCTTCTGGTGAAGGCCGAGAAGCGCAAGTCTCCTCCCAAGGAG TATATTGATGAAGAAGGTGTGAGGTATGTCCCAGTGCGTCCAAGACCTCCCATTACTTTG CTCCGACACTATCGGAACCCCTGGAAAGCTGCTTACCACCACTTTCAGCGGTACAGTGAC GTCCGGGTCAAAGAGGAGAAGAAAGCTATGCTGCAGGAAATAGCTAATCAGAAAGGAGTA TCCTGTCGTGCCCAAGGCTGGAAAGTCCACCTCTGTGCCGCCCAATTGCTGCAGCTGACG AATCTAGAACACGATGTTTATGAACGACTCACCAATCTACAGGAAGGGATTATCCCAAAG AAAAAAGCAGCAACTGATGATGATTTACACCGAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAAACCCAAGTCAGAAATCCATGTATCTATGGCCACTCCAGTCACTGTGTCAATGGAG ACCATATCCAATCAAAATACTGATCAGCCCACCATCGCAGTCCCACCCACCGCCCAGCAG CCTCCACCAACCATTCCAACCATGATTACAGCAGCTAGCCCCCCATCACAACCAGCCGTC GCCCTTCCAACCATTCCTGGAGCAGTTCCCATCACTCCACCCATCACTACCATTGCAGCT GCCCCTCCACCATCAGCAGCAGTAGGTGGCAGTCTCTCCTCCGTTTTGGGCCCTCCTGTT CCTGAAATAAAAGTTAAAGAAGAAGTGGAACCAATGGACATCATGAGACCGGTTTCCGCA GTTCCTCCCCTGGCTACCAACACCGTGTCTCCATCACTGGCATTGCTGGCTAACAACCTG TCCATGCCGACAAGTGACCTACCACCCGGTGCCTCCCCAAGGAAAAAGCCTCGGAAGCAG CAGCACGTGATTTCAACAGAAGAAGGGGATATGATGGAGACCAACAGCACGGACGACGAG AAGTCCACTGCCAAGAGTCTTCTGGTGAAGGCCGAGAAGCGCAAGTCTCCTCCCAAGGAG TATATTGATGAAGAAGGTGTGAGGTATGTCCCAGTGCGTCCAAGACCTCCCATTACTTTG CTCCGACACTATCGGAACCCCTGGAAAGCTGCTTACCACCACTTTCAGCGGTACAGTGAC GTCCGGGTCAAAGAGGAGAAGAAAGCTATGCTGCAGGAAATAGCTAATCAGAAAGGAGTA TCCTGTCGTGCCCAAGGCTGGAAAGTCCACCTCTGTGCCGCCCAATTGCTGCAGCTGACG AATCTAGAACACGATGTTTATGAACGACTCACCAATCTACAGGAAGGGATTATCCCAAAG AAAAAAGCAGCAACTGATGATGATTTACACCGAATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 160-279, - strand, RNAz p=0.653181 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 160-279, - strand, RNAz p=0.653181 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 1-356, gnl|bosTau2|chr2 (1684027-1683672) | |
| 1-356, gnl|canFam2|chr19 (25671745-25671356) | |
| 1-356, gnl|danRer3|chr25 (25721422-25721032) | |
| 1-356, gnl|dasNov1|scaffold_15547 (6603-6990) | |
| 1-356, gnl|echTel1|scaffold_100240 (1503-1114) | |
| 1-356, gnl|fr1|chrUn (43395557-43395176) | |
| 1-356, gnl|galGal2|chr9 (919854-920236) | |
| 1-356, gnl|hg17|chr2 (128428773-128429162) | |
| 1-356, gnl|Hg17|chr2 (128429147-128428792) | |
| 1-356, gnl|loxAfr1|scaffold_12516 (69621-69950) | |
| 1-356, gnl|mm7|chr18 (32091002-32090588) | |
| 1-356, gnl|Mm7|chr18 (32090601-32090956) | |
| 1-356, gnl|monDom2|scaffold_24 (42922088-42921698) | |
| 1-356, gnl|oryCun1|scaffold_173116 (49577-49188) | |
| 1-356, gnl|panTro1|chr13 (14555259-14555648) | |
| 1-356, gnl|rn3|chr18 (24139138-24138746) | |
| 1-356, gnl|xenTro1|scaffold_209 (1284650-1284983) | |
| 358-607, gnl|bosTau2|chr2 (1677332-1677083) | |
| 358-607, gnl|canFam2|chr19 (25674948-25674776) | |
| 358-607, gnl|danRer3|chr2 (14752976-14753148) | |
| 358-607, gnl|dasNov1|scaffold_15547 (4950-5122) | |
| 358-607, gnl|echTel1|scaffold_309763 (12766-12938) | |
| 358-607, gnl|fr1|chrUn (43395889-43395722) | |
| 358-607, gnl|galGal2|chr9 (918158-918326) | |
| 358-607, gnl|hg17|chr2 (128423955-128424127) | |
| 358-607, gnl|Hg17|chr2 (128424213-128423964) | |
| 358-607, gnl|loxAfr1|scaffold_12516 (69408-69541) | |
| 358-607, gnl|mm7|chr18 (32103535-32103363) | |
| 358-607, gnl|Mm7|chr18 (32103275-32103524) | |
| 358-607, gnl|monDom2|scaffold_24 (42923321-42923149) | |
| 358-607, gnl|oryCun1|scaffold_173116 (52690-52518) | |
| 358-607, gnl|panTro1|chr13 (14550443-14550615) | |
| 358-607, gnl|rheMac2|chr13 (134420995-134421167) | |
| 358-607, gnl|rn3|chr18 (24151437-24151265) | |
| 358-607, gnl|tetNig1|chr1_random (715153-714986) | |
| 358-607, gnl|xenTro1|scaffold_209 (1283856-1284029) | |
| 732-837, gnl|bosTau2|chr2 (1667994-1667889) | |
| 732-837, gnl|canFam2|chr19 (25687726-25687584) | |
| 732-837, gnl|danRer3|chr2 (14745252-14745366) | |
| 732-837, gnl|dasNov1|scaffold_15547 (2534-2677) | |
| 732-837, gnl|echTel1|scaffold_309763 (6616-6752) | |
| 732-837, gnl|fr1|chrUn (43396431-43396308) | |
| 732-837, gnl|galGal2|chr9 (916728-916872) | |
| 732-837, gnl|hg17|chr2 (128419237-128419380) | |
| 732-837, gnl|Hg17|chr2 (128419365-128419260) | |
| 732-837, gnl|loxAfr1|scaffold_205470 (674-811) | |
| 732-837, gnl|mm7|chr18 (32107547-32107404) | |
| 732-837, gnl|Mm7|chr18 (32107417-32107522) | |
| 732-837, gnl|monDom2|scaffold_24 (42928139-42927995) | |
| 732-837, gnl|oryCun1|scaffold_173116 (63199-63061) | |
| 732-837, gnl|panTro1|chr13 (14545733-14545876) | |
| 732-837, gnl|rheMac2|chr13 (134416028-134416171) | |
| 732-837, gnl|rn3|chr18 (24155781-24155638) | |
| 732-837, gnl|tetNig1|chr1_random (715685-715562) | |
| 732-837, gnl|xenTro1|scaffold_209 (1282512-1282635) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-356, gnl|bosTau2|chr2 (1684027-1683672) | |
| 1-356, gnl|canFam2|chr19 (25671745-25671356) | |
| 1-356, gnl|danRer3|chr25 (25721422-25721032) | |
| 1-356, gnl|dasNov1|scaffold_15547 (6603-6990) | |
| 1-356, gnl|echTel1|scaffold_100240 (1503-1114) | |
| 1-356, gnl|fr1|chrUn (43395557-43395176) | |
| 1-356, gnl|galGal2|chr9 (919854-920236) | |
| 1-356, gnl|hg17|chr2 (128428773-128429162) | |
| 1-356, gnl|Hg17|chr2 (128429147-128428792) | |
| 1-356, gnl|loxAfr1|scaffold_12516 (69621-69950) | |
| 1-356, gnl|mm7|chr18 (32091002-32090588) | |
| 1-356, gnl|Mm7|chr18 (32090601-32090956) | |
| 1-356, gnl|monDom2|scaffold_24 (42922088-42921698) | |
| 1-356, gnl|oryCun1|scaffold_173116 (49577-49188) | |
| 1-356, gnl|panTro1|chr13 (14555259-14555648) | |
| 1-356, gnl|rn3|chr18 (24139138-24138746) | |
| 1-356, gnl|xenTro1|scaffold_209 (1284650-1284983) | |
| 358-607, gnl|bosTau2|chr2 (1677332-1677083) | |
| 358-607, gnl|canFam2|chr19 (25674948-25674776) | |
| 358-607, gnl|danRer3|chr2 (14752976-14753148) | |
| 358-607, gnl|dasNov1|scaffold_15547 (4950-5122) | |
| 358-607, gnl|echTel1|scaffold_309763 (12766-12938) | |
| 358-607, gnl|fr1|chrUn (43395889-43395722) | |
| 358-607, gnl|galGal2|chr9 (918158-918326) | |
| 358-607, gnl|hg17|chr2 (128423955-128424127) | |
| 358-607, gnl|Hg17|chr2 (128424213-128423964) | |
| 358-607, gnl|loxAfr1|scaffold_12516 (69408-69541) | |
| 358-607, gnl|mm7|chr18 (32103535-32103363) | |
| 358-607, gnl|Mm7|chr18 (32103275-32103524) | |
| 358-607, gnl|monDom2|scaffold_24 (42923321-42923149) | |
| 358-607, gnl|oryCun1|scaffold_173116 (52690-52518) | |
| 358-607, gnl|panTro1|chr13 (14550443-14550615) | |
| 358-607, gnl|rheMac2|chr13 (134420995-134421167) | |
| 358-607, gnl|rn3|chr18 (24151437-24151265) | |
| 358-607, gnl|tetNig1|chr1_random (715153-714986) | |
| 358-607, gnl|xenTro1|scaffold_209 (1283856-1284029) | |
| 732-837, gnl|bosTau2|chr2 (1667994-1667889) | |
| 732-837, gnl|canFam2|chr19 (25687726-25687584) | |
| 732-837, gnl|danRer3|chr2 (14745252-14745366) | |
| 732-837, gnl|dasNov1|scaffold_15547 (2534-2677) | |
| 732-837, gnl|echTel1|scaffold_309763 (6616-6752) | |
| 732-837, gnl|fr1|chrUn (43396431-43396308) | |
| 732-837, gnl|galGal2|chr9 (916728-916872) | |
| 732-837, gnl|hg17|chr2 (128419237-128419380) | |
| 732-837, gnl|Hg17|chr2 (128419365-128419260) | |
| 732-837, gnl|loxAfr1|scaffold_205470 (674-811) | |
| 732-837, gnl|mm7|chr18 (32107547-32107404) | |
| 732-837, gnl|Mm7|chr18 (32107417-32107522) | |
| 732-837, gnl|monDom2|scaffold_24 (42928139-42927995) | |
| 732-837, gnl|oryCun1|scaffold_173116 (63199-63061) | |
| 732-837, gnl|panTro1|chr13 (14545733-14545876) | |
| 732-837, gnl|rheMac2|chr13 (134416028-134416171) | |
| 732-837, gnl|rn3|chr18 (24155781-24155638) | |
| 732-837, gnl|tetNig1|chr1_random (715685-715562) | |
| 732-837, gnl|xenTro1|scaffold_209 (1282512-1282635) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| elu (0.385356) | |
| cte (0.29274) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cty (0.10408) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| cte (0.29274) | |
| pla (0.133672) | |
| eep (0.122564) | |
| cty (0.10408) |