Non-Coding RNA Search

Ss1.1-rpigcb_3924.5

Sequence:


               
               TGCCGTCATCTCAGAGCGTGATCACACTGCAGAGAGATTCTGAAAGGTACATGTGGAAGG
CAGACGATGAAGAGAAAGAAATCTGAAGTCCAGATTGTCAAAAGACTTTATACTCGCACT
TCTTTCAAATCCATACAGTGAGGAATCCAAATATTTATAGAGGTATGAGTTGAATGCAAT
TTTTATTTTTGGTAACTGTGAAAAAGAAGATACTGTGGAAATATATACATGCCTTGTACA
GTTATCAACATAATTTTCATTACCAAAATGTACAGCATACTATTGTTTGCCATGGAAAAG
TTAGTCTCATTTAGAAAAATTGAAAGTGCACAGCACTTAAAGGGAATATATGATTTTTTA
AAACTTTTATTTATTATTTTTAGTATACTGTCTGAAATGTGTTGGCAGTTTATTTCTTTT
AATGTGTCAACTCAAAGAAATGTATACATTTTGTGCTATGTTTGGCAACAAACCCATTTG
ATTTATATAGTTTTATATTAATTTTTTTTGCCCTGATTGTTTAGGGTGATATGTATATGT
ATGTGCTGCTTGATGTCCGTATATACACACACACATATATATACAAACACACATAATTCT
AAATTTTTTAAAACTCATCACCAATGTCTATTGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCCGTCATCTCAGAGCGTGATCACACTGCAGAGAGATTCTGAAAGGTACATGTGGAAGG
CAGACGATGAAGAGAAAGAAATCTGAAGTCCAGATTGTCAAAAGACTTTATACTCGCACT
TCTTTCAAATCCATACAGTGAGGAATCCAAATATTTATAGAGGTATGAGTTGAATGCAAT
TTTTATTTTTGGTAACTGTGAAAAAGAAGATACTGTGGAAATATATACATGCCTTGTACA
GTTATCAACATAATTTTCATTACCAAAATGTACAGCATACTATTGTTTGCCATGGAAAAG
TTAGTCTCATTTAGAAAAATTGAAAGTGCACAGCACTTAAAGGGAATATATGATTTTTTA
AAACTTTTATTTATTATTTTTAGTATACTGTCTGAAATGTGTTGGCAGTTTATTTCTTTT
AATGTGTCAACTCAAAGAAATGTATACATTTTGTGCTATGTTTGGCAACAAACCCATTTG
ATTTATATAGTTTTATATTAATTTTTTTTGCCCTGATTGTTTAGGGTGATATGTATATGT
ATGTGCTGCTTGATGTCCGTATATACACACACACATATATATACAAACACACATAATTCT
AAATTTTTTAAAACTCATCACCAATGTCTATTGATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               440-536, + strand, RNAz p=0.997831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               440-536, + strand, RNAz p=0.997831

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AK094706, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AK094706, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-636, gnl|bosTau2|chr9 (12811842-12811202)
               

               
               1-636, gnl|Hg17|chr6 (126291730-126292416)
               

               
               1-636, gnl|Mm7|chr10 (30428048-30427405)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-636, gnl|bosTau2|chr9 (12811842-12811202)
               

               
               1-636, gnl|Hg17|chr6 (126291730-126292416)
               

               
               1-636, gnl|Mm7|chr10 (30428048-30427405)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               hea (0.204499)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               cty (0.10408)

	1-636, gnl\|bosTau2\|chr9 (12811842-12811202)
	1-636, gnl\|Hg17\|chr6 (126291730-126292416)
	1-636, gnl\|Mm7\|chr10 (30428048-30427405)