Ss1.1-rpigcb_3928.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGAAGCAGACGACATTCGAAGGCGGCATGAGAGAGCCTGCCATCGCCTGGTGGCCCGGC CACATCCCTGCTGGCCAGGTGAGCCACCAGCTGGGCAGTGTCATGGATCTCTTCACCACC AGCCTGTCCCTCGCAGGCCTGGAGCCCCCCAGCGACAGAGCCATTGACGGCCTGGACCTC CTCCCAGCCATGCTGCAGGGCCGCTTGACAGAGAGGCCGATATTCTATTACCGCGGCAAC ACGCTGATGGCCGCCACCCTTGGCCAGTACAAGGCCCATTTTTGGACTTGGACCAATTCC TGGGAGGAGTTCAGACAGGGTGTCGATTTCTGCCCCGGGCAGAACGTCTCGGGTGTCACC ACCCACTCGCAGGAAGAGCACACGAAGCTGCCGCTCATCTTCCACCTGGGACGAGATCCG GGAGAGAGGTTCCCGCTCAGCTTTGCCAGCACCGAGTACCTGGATGCCCTTCGCAAGATC ACCCCGGTCGTCCAGCAGCACCAGGAGTCCTTGGTTCCCGGGCAGCCCCAGCTCAACGTG TGCAACCCGGCAGTCATGAACTGGGCGCCCCCGGGCTGTGAAAAGCTGGGGAAGTGCCTC ACGCCCCCGGAATCTGTCCCGGAAAAATGCTCCTGGCCCCACTAGCACCTGCTGGGCTGA AGCCACGTCCGGGATCTCCCCAGACCTGCAGCTGCCAGAGGCTCTGGCCTCTGGGCTCCA GGGCTGCCCTCTGCCCTGCCCAGTGCCAGCCTGCGCCACCTGCAGCCAGCAGCGGGACCT GCAAGGCCATGCCTGCGCGAGCCCGGGCCCTAGAGTCACTCCCTCTCAGCCTGCCGGATT CAGGCTGCCTGATTCTGCCACCTCTGGCCGCCATCAGCCCCTGAACCAGATGCTGCCTGT CTCACAGGCTCCCCCTCTGCTCCACCTGCCTTCCTGGCCGGACCGATCCAGGGCCCAGAG CGTGTGACTTGCTCTGGCTGCCCCAGCAGTCCGTGGTGTCAAGGAGGGTAGCTGTGCCAG TCCTGTGTCACCCCTTGCCATTATGCAGGGGGGGTGCCCTGGCCCCACCCCCCATGATGG GGGTTTGTGAACATGGACGGGGGAGCAGACCAAGATCCTCCCTGACCTGGATCCTCGGCA GCCAAGGCTTCCCGAGGCCGGTGGGGACAGCTGATGCCACCACCTCACCCCTGACGCCAG CACACTCTGGGCCTGTCAGTGCCTCACAGCTGCCCTGCTTGCCCTCCTCCCCTTGAGCCC AGGGTGGCAAAGCTTGACGATGAGCCTGGGCAGGTCTGTGCAGACTCCAGCCACCCCACC CTGAAAGCCTGGGGACCATATTTCCATTCTGCAGGTTGTCAGGCCAACTCTGCTGTTTTT AAGACTTGGGAAATTTTGAAAAAGCAGTTCTAGAATACAGGAACAGGCATTTTAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGAAGCAGACGACATTCGAAGGCGGCATGAGAGAGCCTGCCATCGCCTGGTGGCCCGGC CACATCCCTGCTGGCCAGGTGAGCCACCAGCTGGGCAGTGTCATGGATCTCTTCACCACC AGCCTGTCCCTCGCAGGCCTGGAGCCCCCCAGCGACAGAGCCATTGACGGCCTGGACCTC CTCCCAGCCATGCTGCAGGGCCGCTTGACAGAGAGGCCGATATTCTATTACCGCGGCAAC ACGCTGATGGCCGCCACCCTTGGCCAGTACAAGGCCCATTTTTGGACTTGGACCAATTCC TGGGAGGAGTTCAGACAGGGTGTCGATTTCTGCCCCGGGCAGAACGTCTCGGGTGTCACC ACCCACTCGCAGGAAGAGCACACGAAGCTGCCGCTCATCTTCCACCTGGGACGAGATCCG GGAGAGAGGTTCCCGCTCAGCTTTGCCAGCACCGAGTACCTGGATGCCCTTCGCAAGATC ACCCCGGTCGTCCAGCAGCACCAGGAGTCCTTGGTTCCCGGGCAGCCCCAGCTCAACGTG TGCAACCCGGCAGTCATGAACTGGGCGCCCCCGGGCTGTGAAAAGCTGGGGAAGTGCCTC ACGCCCCCGGAATCTGTCCCGGAAAAATGCTCCTGGCCCCACTAGCACCTGCTGGGCTGA AGCCACGTCCGGGATCTCCCCAGACCTGCAGCTGCCAGAGGCTCTGGCCTCTGGGCTCCA GGGCTGCCCTCTGCCCTGCCCAGTGCCAGCCTGCGCCACCTGCAGCCAGCAGCGGGACCT GCAAGGCCATGCCTGCGCGAGCCCGGGCCCTAGAGTCACTCCCTCTCAGCCTGCCGGATT CAGGCTGCCTGATTCTGCCACCTCTGGCCGCCATCAGCCCCTGAACCAGATGCTGCCTGT CTCACAGGCTCCCCCTCTGCTCCACCTGCCTTCCTGGCCGGACCGATCCAGGGCCCAGAG CGTGTGACTTGCTCTGGCTGCCCCAGCAGTCCGTGGTGTCAAGGAGGGTAGCTGTGCCAG TCCTGTGTCACCCCTTGCCATTATGCAGGGGGGGTGCCCTGGCCCCACCCCCCATGATGG GGGTTTGTGAACATGGACGGGGGAGCAGACCAAGATCCTCCCTGACCTGGATCCTCGGCA GCCAAGGCTTCCCGAGGCCGGTGGGGACAGCTGATGCCACCACCTCACCCCTGACGCCAG CACACTCTGGGCCTGTCAGTGCCTCACAGCTGCCCTGCTTGCCCTCCTCCCCTTGAGCCC AGGGTGGCAAAGCTTGACGATGAGCCTGGGCAGGTCTGTGCAGACTCCAGCCACCCCACC CTGAAAGCCTGGGGACCATATTTCCATTCTGCAGGTTGTCAGGCCAACTCTGCTGTTTTT AAGACTTGGGAAATTTTGAAAAAGCAGTTCTAGAATACAGGAACAGGCATTTTAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 76-752, + strand, RNAz p=0.874437 | |
| 122-226, - strand, RNAz p=0.940353 | |
| 316-1365, - strand, RNAz p=0.942984 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 76-752, + strand, RNAz p=0.874437 | |
| 122-226, - strand, RNAz p=0.940353 | |
| 316-1365, - strand, RNAz p=0.942984 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 76-226, gnl|bosTau2|chr18 (12561517-12561667) | |
| 76-226, gnl|canFam2|chr5 (67548961-67548808) | |
| 76-226, gnl|danRer3|chr7 (49446150-49446002) | |
| 76-226, gnl|dasNov1|scaffold_117578 (990-1121) | |
| 76-226, gnl|echTel1|scaffold_267556 (6374-6528) | |
| 76-226, gnl|fr1|chrUn (209189463-209189612) | |
| 76-226, gnl|galGal2|chr11 (18967303-18967153) | |
| 76-226, gnl|hg17|chr16 (87420604-87420760) | |
| 76-226, gnl|Hg17|chr16 (87420750-87420605) | |
| 76-226, gnl|loxAfr1|scaffold_135279 (5662-5548) | |
| 76-226, gnl|mm7|chr8 (121234201-121234355) | |
| 76-226, gnl|Mm7|chr8 (121234345-121234198) | |
| 76-226, gnl|monDom2|scaffold_23 (8051976-8051820) | |
| 76-226, gnl|oryCun1|scaffold_86695 (3915-4069) | |
| 76-226, gnl|panTro1|chr18 (82420093-82420247) | |
| 76-226, gnl|rheMac2|chr10 (94656097-94656227) | |
| 76-226, gnl|rn3|chr19 (52876358-52876512) | |
| 76-226, gnl|tetNig1|chr5 (7794559-7794412) | |
| 76-226, gnl|xenTro1|scaffold_819 (315489-315379) | |
| 316-447, gnl|bosTau2|chr18 (12563874-12564005) | |
| 316-447, gnl|Hg17|chr16 (87416622-87416491) | |
| 316-447, gnl|Mm7|chr8 (121227041-121226910) | |
| 558-953, gnl|bosTau2|chr18 (12566944-12567314) | |
| 558-953, gnl|Hg17|chr16 (87408435-87408085) | |
| 1142-1432, gnl|bosTau2|chr18 (12567514-12567815) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 76-226, gnl|bosTau2|chr18 (12561517-12561667) | |
| 76-226, gnl|canFam2|chr5 (67548961-67548808) | |
| 76-226, gnl|danRer3|chr7 (49446150-49446002) | |
| 76-226, gnl|dasNov1|scaffold_117578 (990-1121) | |
| 76-226, gnl|echTel1|scaffold_267556 (6374-6528) | |
| 76-226, gnl|fr1|chrUn (209189463-209189612) | |
| 76-226, gnl|galGal2|chr11 (18967303-18967153) | |
| 76-226, gnl|hg17|chr16 (87420604-87420760) | |
| 76-226, gnl|Hg17|chr16 (87420750-87420605) | |
| 76-226, gnl|loxAfr1|scaffold_135279 (5662-5548) | |
| 76-226, gnl|mm7|chr8 (121234201-121234355) | |
| 76-226, gnl|Mm7|chr8 (121234345-121234198) | |
| 76-226, gnl|monDom2|scaffold_23 (8051976-8051820) | |
| 76-226, gnl|oryCun1|scaffold_86695 (3915-4069) | |
| 76-226, gnl|panTro1|chr18 (82420093-82420247) | |
| 76-226, gnl|rheMac2|chr10 (94656097-94656227) | |
| 76-226, gnl|rn3|chr19 (52876358-52876512) | |
| 76-226, gnl|tetNig1|chr5 (7794559-7794412) | |
| 76-226, gnl|xenTro1|scaffold_819 (315489-315379) | |
| 316-447, gnl|bosTau2|chr18 (12563874-12564005) | |
| 316-447, gnl|Hg17|chr16 (87416622-87416491) | |
| 316-447, gnl|Mm7|chr8 (121227041-121226910) | |
| 558-953, gnl|bosTau2|chr18 (12566944-12567314) | |
| 558-953, gnl|Hg17|chr16 (87408435-87408085) | |
| 1142-1432, gnl|bosTau2|chr18 (12567514-12567815) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| lnt (0.426925) | |
| nep (0.183925) | |
| nje (0.16592) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lnt (0.426925) | |
| nep (0.183925) | |
| nje (0.16592) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| ese (0.126502) | |
| eep (0.122564) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |